chr10:60462349:T>C Detail (hg38) (ANK3)

Information

Genome

Assembly Position
hg19 chr10:62,222,107-62,222,107 View the variant detail on this assembly version.
hg38 chr10:60,462,349-60,462,349

HGVS

Type Transcript Protein
RefSeq NM_001204403.1:c.96+152837A>G
NM_001204404.1:c.63+110116A>G
Ensemble ENST00000373827.6:c.96+152837A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.470
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 600465 OMIM
HGNC 494 HGNC
Ensembl ENSG00000151150 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv39463803 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Psychotic Disorders A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.003 bipolar disorder In a joint analysis with a bipolar disorder sample (16,374 affected individuals ... BeFree 21926974 Detail
0.001 Psychotic Disorders A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.270 bipolar disorder In a joint analysis with a bipolar disorder sample (16,374 affected individuals ... BeFree 21926974 Detail
<0.001 Nonorganic psychosis A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
<0.001 Nonorganic psychosis A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.002 Psychotic Disorders A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.129 schizophrenia A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.266 bipolar disorder In a joint analysis with a bipolar disorder sample (16,374 affected individuals ... BeFree 21926974 Detail
0.270 bipolar disorder A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
<0.001 bipolar disorder In a joint analysis with a bipolar disorder sample (16,374 affected individuals ... BeFree 21926974 Detail
0.001 Nonorganic psychosis A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.135 schizophrenia A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.266 bipolar disorder A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
0.121 schizophrenia A history of suicide attempt was assessed in a sample of 1009 patients with BD, ... BeFree 24461634 Detail
Annotation

Annotations

DescrptionSourceLinks
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
In a joint analysis with a bipolar disorder sample (16,374 affected individuals and 14,044 controls)... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
In a joint analysis with a bipolar disorder sample (16,374 affected individuals and 14,044 controls)... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
In a joint analysis with a bipolar disorder sample (16,374 affected individuals and 14,044 controls)... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
In a joint analysis with a bipolar disorder sample (16,374 affected individuals and 14,044 controls)... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail
A history of suicide attempt was assessed in a sample of 1009 patients with BD, SCZ and related psyc... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs10994359 dbSNP
Genome
hg38
Position
chr10:60,462,349-60,462,349
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs10994359
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.47
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7877
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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