chr10:62518923:G>A Detail (hg38)

Information

Genome

Assembly Position
hg19 chr10:64,278,682-64,278,682 View the variant detail on this assembly version.
hg38 chr10:62,518,923-62,518,923

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.031
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 breast carcinoma Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.080 breast carcinoma Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carr... BeFree 22348646 Detail
0.023 breast carcinoma Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.043 Malignant neoplasm of breast Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.240 Malignant neoplasm of breast Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carr... BeFree 22348646 Detail
0.121 Malignant neoplasm of breast Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.121 Mammographic Density Genome-wide association study identifies multiple loci associated with both mamm... GWASCAT 25342443 Detail
0.003 breast carcinoma Associations were also observed with rs10995190 in the ZNF365 gene (P &lt; 1.0 ×... BeFree 25012995 Detail
0.123 Malignant neoplasm of breast Associations were also observed with rs10995190 in the ZNF365 gene (P &lt; 1.0 ×... BeFree 25012995 Detail
0.123 Malignant neoplasm of breast Large-scale genotyping identifies 41 new loci associated with breast cancer risk... GWASCAT 23535729 Detail
0.123 Malignant neoplasm of breast We contrast the three methods, CASAM-Area, CASAM-Vol and Volpara directly and in... BeFree 25329322 Detail
0.123 Malignant neoplasm of breast Genome-wide association studies identify four ER negative-specific breast cancer... GWASCAT 23535733 Detail
0.003 breast carcinoma We contrast the three methods, CASAM-Area, CASAM-Vol and Volpara directly and in... BeFree 25329322 Detail
0.123 Malignant neoplasm of breast Genome-wide association study identifies five new breast cancer susceptibility l... GWASCAT 20453838 Detail
Annotation

Annotations

DescrptionSourceLinks
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carriers: rs10995190, P-... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carriers: rs10995190, P-... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Genome-wide association study identifies multiple loci associated with both mammographic density and... DisGeNET Detail
Associations were also observed with rs10995190 in the ZNF365 gene (P &lt; 1.0 × 10(-6)) and breast ... DisGeNET Detail
Associations were also observed with rs10995190 in the ZNF365 gene (P &lt; 1.0 × 10(-6)) and breast ... DisGeNET Detail
Large-scale genotyping identifies 41 new loci associated with breast cancer risk. DisGeNET Detail
We contrast the three methods, CASAM-Area, CASAM-Vol and Volpara directly and in terms of associatio... DisGeNET Detail
Genome-wide association studies identify four ER negative-specific breast cancer risk loci. DisGeNET Detail
We contrast the three methods, CASAM-Area, CASAM-Vol and Volpara directly and in terms of associatio... DisGeNET Detail
Genome-wide association study identifies five new breast cancer susceptibility loci. DisGeNET Detail
Gene
-
dbSNP
rs10995190 dbSNP
Genome
hg38
Position
chr10:62,518,923-62,518,923
Variant Type
snv
Reference Allele
G
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs10995190
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.0312
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
523
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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