chr11:2776032:C>A Detail (hg38) (KCNQ1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr11:2,797,262-2,797,262 View the variant detail on this assembly version.
hg38	chr11:2,776,032-2,776,032

HGVS

KCNQ1

Type	Transcript	Protein
RefSeq	NM_000218.2:c.1663C>A	NP_000209.2:p.Arg555Ser
	NM_181798.1:c.1282C>A	NP_861463.1:p.Arg428Ser
Ensemble	ENST00000155840.12:c.1663C>A	ENST00000155840.12:p.Arg555Ser
	ENST00000335475.6:c.1282C>A	ENST00000335475.6:p.Arg428Ser
	ENST00000496887.7:c.1306C>A	ENST00000496887.7:p.Arg436Ser
	ENST00000646564.2:c.1123C>A	ENST00000646564.2:p.Arg375Ser
	ENST00000713725.1:c.1522C>A	ENST00000713725.1:p.Arg508Ser

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

KCNQ1

Type	Database	ID	Link
Gene	MIM	607542	OMIM
	HGNC	6294	HGNC
	Ensembl	ENSG00000053918	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely pathogenic	2023-06-01	criteria provided, single submitter	Congenital long QT syndrome	germline	Detail
Likely pathogenic	2020-03-11	criteria provided, single submitter	not provided	germline	Detail
Pathogenic Likely pathogenic	2023-10-23	criteria provided, multiple submitters, no conflicts	long QT syndrome	germline	Detail
Likely pathogenic	2023-09-07	criteria provided, single submitter	Cardiac arrhythmia	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.133	Congenital long QT syndrome	NA	CLINVAR		Detail
0.573	Romano-Ward Syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000218.3(KCNQ1):c.1663C>A (p.Arg555Ser) AND Congenital long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.1663C>A (p.Arg555Ser) AND not provided	ClinVar	Detail
NM_000218.3(KCNQ1):c.1663C>A (p.Arg555Ser) AND Long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.1663C>A (p.Arg555Ser) AND Cardiac arrhythmia	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs120074185 dbSNP
Genome: hg38
Position: chr11:2,776,032-2,776,032
Variant Type: snv
Reference Allele: C
Alternative Allele: A
East Asian Chromosome Counts (ExAC): 1668
East Asian Allele Counts (ExAC): 0
East Asian Heterozygous Counts (ExAC): 0
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 0.0
Chromosome Counts in All Race (ExAC): 27888
Allele Counts in All Race (ExAC): 1
Heterozygous Counts in All Race (ExAC): 1
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 3.5857716580608144E-5

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