chr13:32394814:C>T Detail (hg38) (BRCA2)

Information

Genome

Assembly Position
hg19 chr13:32,968,951-32,968,951 View the variant detail on this assembly version.
hg38 chr13:32,394,814-32,394,814

HGVS

Type Transcript Protein
RefSeq NM_000059.3:c.9382C>T NP_000050.2:p.Arg3128Ter
Ensemble ENST00000380152.8:c.9382C>T ENST00000380152.8:p.Arg3128Ter
ENST00000530893.7:c.9013C>T ENST00000530893.7:p.Arg3005Ter
Summary

MGeND

Clinical significance Pathogenic Uncertain significance
Variant entry 2
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 600185 OMIM
HGNC 1101 HGNC
Ensembl ENSG00000139618 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM2071571 COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
Pathogenic other germline MGS000001
(TMGS000137) 		Kenjiro Kosaki Keio University
Uncertain significance other germline MGS000067
(TMGS000139) 		Kenjiro Kosaki Keio University
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2024-01-25 criteria provided, multiple submitters, no conflicts hereditary breast ovarian cancer syndrome germline unknown Detail
Pathogenic 2016-04-22 reviewed by expert panel Breast-ovarian cancer, familial, susceptibility to, 2 germline unknown Detail
Pathogenic 2023-12-11 criteria provided, multiple submitters, no conflicts Hereditary cancer-predisposing syndrome germline Detail
Pathogenic 2022-10-05 criteria provided, multiple submitters, no conflicts not provided germline unknown Detail
Pathogenic 2015-11-01 criteria provided, multiple submitters, no conflicts Breast neoplasm germline Detail
Pathogenic 2023-09-22 criteria provided, multiple submitters, no conflicts Familial cancer of breast germline unknown Detail
Pathogenic 2019-08-16 criteria provided, single submitter Breast and/or ovarian cancer germline Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Wilms tumor 1,Familial cancer of breast,Pancreatic cancer, susceptibility to, 2,Fanconi anemia complementation group D1,Breast-ovarian cancer, familial, susceptibility to, 2,Glioma susceptibility 3,medulloblastoma,Malignant tumor of prostate unknown Detail
Pathogenic 2022-03-05 criteria provided, single submitter BRCA2-related disorder germline Detail
Pathogenic 2021-07-01 no assertion criteria provided Gastric cancer germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.240 Breast-ovarian cancer, familial, susceptibility to, 2 NA CLINVAR Detail
0.174 Breast Cancer, Familial NA CLINVAR Detail
0.391 Hereditary Breast and Ovarian Cancer Syndrome NA CLINVAR Detail
0.128 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Hereditary breast ovarian cancer syndrome ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Breast-ovarian cancer, familial, susceptibility to, ... ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND not provided ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Breast neoplasm ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Familial cancer of breast ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Breast and/or ovarian cancer ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND multiple conditions ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND BRCA2-related disorder ClinVar Detail
NM_000059.4(BRCA2):c.9382C>T (p.Arg3128Ter) AND Gastric cancer ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs80359212 dbSNP
Genome
hg38
Position
chr13:32,394,814-32,394,814
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8648
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121304
Allele Counts in All Race (ExAC)
2
Heterozygous Counts in All Race (ExAC)
2
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
1.648750247312537E-5
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