chr3:10142113:T>A Detail (hg38) (VHL)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr3:10,183,797-10,183,797 View the variant detail on this assembly version.
hg38	chr3:10,142,113-10,142,113

HGVS

VHL

Type	Transcript	Protein
RefSeq	NM_000551.3:c.266T>A	NP_000542.1:p.Leu89His
	NM_198156.2:c.266T>A	NP_937799.1:p.Leu89His
Ensemble	ENST00000256474.3:c.266T>A	ENST00000256474.3:p.Leu89His
	ENST00000345392.3:c.266T>A	ENST00000345392.3:p.Leu89His
	ENST00000696143.2:c.266T>A	ENST00000696143.2:p.Leu89His
	ENST00000696153.1:c.266T>A	ENST00000696153.1:p.Leu89His
	ENST00000713811.1:c.266T>A	ENST00000713811.1:p.Leu89His
	ENST00000713812.1:c.219+47T>A
	ENST00000713815.1:c.36+230T>A
	ENST00000713982.1:c.266T>A	ENST00000713982.1:p.Leu89His

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Likely pathogenic
Review star
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Links

VHL

Type	Database	ID	Link
Gene	MIM	608537	OMIM
	HGNC	12687	HGNC
	Ensembl	ENSG00000134086	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM14305	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely pathogenic	2015-07-14	no assertion criteria provided	Papillary renal cell carcinoma type 1	somatic	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.125	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail
0.658	Von Hippel-Lindau syndrome	Germline mutations in the Von Hippel-Lindau disease (VHL) gene in families from ...	UNIPROT	8956040	Detail

Annotation

Annotations

Descrption	Source	Links
NM_000551.4(VHL):c.266T>A (p.Leu89His) AND Papillary renal cell carcinoma type 1	ClinVar	Detail
NA	DisGeNET	Detail
Germline mutations in the Von Hippel-Lindau disease (VHL) gene in families from North America, Europ...	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs5030807 dbSNP
Genome: hg38
Position: chr3:10,142,113-10,142,113
Variant Type: snv
Reference Allele: T
Alternative Allele: A
Variant (CIViC) (CIViC Variant): L89H (c.266T>A)
Transcript 1 (CIViC Variant): ENST00000256474.2
Variant URL (CIViC Variant): https://civic.genome.wustl.edu/links/variants/2308

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