chr3:37050528:G>A Detail (hg38) (MLH1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:37,092,019-37,092,019 View the variant detail on this assembly version.
hg38	chr3:37,050,528-37,050,528

HGVS

MLH1

Type	Transcript	Protein
RefSeq	NM_000249.3:c.2146G>A	NP_000240.1:p.Val716Met
	NM_001167617.1:c.1852G>A	NP_001161089.1:p.Val618Met
	NM_001167618.1:c.1423G>A	NP_001161090.1:p.Val475Met
	NM_001258271.1:c.1939G>A	NP_001245200.1:p.Val647Met
	NM_001258274.1:c.1423G>A	NP_001245203.1:p.Val475Met
	NM_001258273.1:c.1423G>A	NP_001245202.1:p.Val475Met
	NM_001167619.1:c.1423G>A	NP_001161091.1:p.Val475Met
Ensemble	ENST00000231790.8:c.2146G>A	ENST00000231790.8:p.Val716Met
	ENST00000435176.5:c.1852G>A	ENST00000435176.5:p.Val618Met
	ENST00000450420.6:c.*38G>A
	ENST00000455445.6:c.1423G>A	ENST00000455445.6:p.Val475Met
	ENST00000456676.7:c.1939G>A	ENST00000456676.7:p.Val647Met
	ENST00000458205.6:c.1423G>A	ENST00000458205.6:p.Val475Met
	ENST00000466900.6:c.1423G>A	ENST00000466900.6:p.Val475Met
	ENST00000485889.2:c.1423G>A	ENST00000485889.2:p.Val475Met
	ENST00000492474.6:c.1423G>A	ENST00000492474.6:p.Val475Met
	ENST00000536378.5:c.1423G>A	ENST00000536378.5:p.Val475Met
	ENST00000539477.6:c.1423G>A	ENST00000539477.6:p.Val475Met
	ENST00000616768.6:c.2053G>A	ENST00000616768.6:p.Val685Met
	ENST00000673673.2:c.1981G>A	ENST00000673673.2:p.Val661Met
	ENST00000673899.1:c.1414G>A	ENST00000673899.1:p.Val472Met
	ENST00000673990.2:c.1123G>A	ENST00000673990.2:p.Val375Met
	ENST00000674019.1:c.1423G>A	ENST00000674019.1:p.Val475Met
	ENST00000713802.1:c.2047G>A	ENST00000713802.1:p.Val683Met

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Benign
Review star
Show details

Links

MLH1

Type	Database	ID	Link
Gene	MIM	120436	OMIM
	HGNC	7127	HGNC
	Ensembl	ENSG00000076242	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar	tgv317524530	TogoVar
	COSMIC	COSM6987286	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Benign Likely benign	2024-04-01	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail
Benign	2013-09-05	reviewed by expert panel	Lynch syndrome	germline	Detail
Benign	2023-01-24	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Benign Likely benign	2023-08-15	criteria provided, multiple submitters, no conflicts	not specified	germline unknown	Detail
Benign Likely benign	2019-05-28	criteria provided, multiple submitters, no conflicts	Colorectal cancer, hereditary nonpolyposis, type 2	germline unknown	Detail
Benign	2024-02-01	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
Benign		no assertion criteria provided		germline	Detail
Likely benign	2022-12-16	criteria provided, single submitter	Breast and/or ovarian cancer	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
<0.001	Hereditary pancreatitis	Second, the samples from Finnish hereditary prostate cancer (HPC) families were ...	BeFree	16963262	Detail

Annotation

Annotations

Descrption	Source	Links
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND not provided	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Lynch syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND not specified	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Colorectal cancer, hereditary nonpolyposis, type 2	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Malignant tumor of breast	ClinVar	Detail
NM_000249.4(MLH1):c.2146G>A (p.Val716Met) AND Breast and/or ovarian cancer	ClinVar	Detail
Second, the samples from Finnish hereditary prostate cancer (HPC) families were used for the screeni...	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs35831931 dbSNP
Genome: hg38
Position: chr3:37,050,528-37,050,528
Variant Type: snv
Reference Allele: G
Alternative Allele: A
East Asian Chromosome Counts (ExAC): 8590
East Asian Allele Counts (ExAC): 0
East Asian Heterozygous Counts (ExAC): 0
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 0.0
Chromosome Counts in All Race (ExAC): 121234
Allele Counts in All Race (ExAC): 148
Heterozygous Counts in All Race (ExAC): 148
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 0.001220779649273306

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