chr3:9748794:G>A Detail (hg38)

Information

Genome

Assembly Position
hg19 chr3:9,790,478-9,790,478 View the variant detail on this assembly version.
hg38 chr3:9,748,794-9,748,794

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.048
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Malignant neoplasm of prostate Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated... BeFree 25284284 Detail
0.004 prostate carcinoma Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated... BeFree 25284284 Detail
<0.001 prostate carcinoma Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated... BeFree 25284284 Detail
0.020 Malignant neoplasm of prostate Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated... BeFree 25284284 Detail
0.005 prostate carcinoma A high tertile selenium level in combination with non-wt rs125701 of the OGG1 ge... BeFree 21982398 Detail
0.045 Malignant neoplasm of prostate A high tertile selenium level in combination with non-wt rs125701 of the OGG1 ge... BeFree 21982398 Detail
0.004 Carcinoma of bladder Subjects who were heterozygous or homozygous variant for an OGG1 SNP in the prom... BeFree 17203305 Detail
0.004 prostate carcinoma A high tertile selenium level in combination with non-wt rs125701 of the OGG1 ge... BeFree 21982398 Detail
0.030 Malignant neoplasm of urinary bladder Subjects who were heterozygous or homozygous variant for an OGG1 SNP in the prom... BeFree 17203305 Detail
0.020 Malignant neoplasm of prostate A high tertile selenium level in combination with non-wt rs125701 of the OGG1 ge... BeFree 21982398 Detail
Annotation

Annotations

DescrptionSourceLinks
Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated with an increased r... DisGeNET Detail
Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated with an increased r... DisGeNET Detail
Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated with an increased r... DisGeNET Detail
Less common alleles of rs11913319 in TXNRD2 and rs125701 in OGG1 were associated with an increased r... DisGeNET Detail
A high tertile selenium level in combination with non-wt rs125701 of the OGG1 gene in combination wi... DisGeNET Detail
A high tertile selenium level in combination with non-wt rs125701 of the OGG1 gene in combination wi... DisGeNET Detail
Subjects who were heterozygous or homozygous variant for an OGG1 SNP in the promoter region (rs12570... DisGeNET Detail
A high tertile selenium level in combination with non-wt rs125701 of the OGG1 gene in combination wi... DisGeNET Detail
Subjects who were heterozygous or homozygous variant for an OGG1 SNP in the promoter region (rs12570... DisGeNET Detail
A high tertile selenium level in combination with non-wt rs125701 of the OGG1 gene in combination wi... DisGeNET Detail
Gene
-
dbSNP
rs125701 dbSNP
Genome
hg38
Position
chr3:9,748,794-9,748,794
Variant Type
snv
Reference Allele
G
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs125701
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.048
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
804
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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