chr5:115769132:T>C Detail (hg38)

Information

Genome

Assembly Position
hg19 chr5:115,104,829-115,104,829 View the variant detail on this assembly version.
hg38 chr5:115,769,132-115,769,132

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.437
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.002 breast carcinoma Here, we selected four commonly studied polymorphisms in VEGF, rs3025039 (known ... BeFree 22315135 Detail
0.002 Malignant neoplasm of breast Here, we selected four commonly studied polymorphisms in VEGF, rs3025039 (known ... BeFree 22315135 Detail
Annotation

Annotations

DescrptionSourceLinks
Here, we selected four commonly studied polymorphisms in VEGF, rs3025039 (known as +936 C/T), rs1109... DisGeNET Detail
Here, we selected four commonly studied polymorphisms in VEGF, rs3025039 (known as +936 C/T), rs1109... DisGeNET Detail
Gene
-
dbSNP
rs154765 dbSNP
Genome
hg38
Position
chr5:115,769,132-115,769,132
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs154765
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4368
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7321
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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