chr6:33087470:T>C Detail (hg38) (HLA-DPB1)

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Information

Genome

Assembly	Position
hg19	chr6:33,055,247-33,055,247 View the variant detail on this assembly version.
hg38	chr6:33,087,470-33,087,470

Summary

Links

Type	Database	ID	Link
Gene	MIM	142858	OMIM
	HGNC	4940	HGNC
	Ensembl	ENSG00000223865	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar	tgv24871612	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

[No Data.]

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.248	Hepatitis B, Chronic	We also found that the HLA-DPA1 and HLA-DPB1 genes were significantly associated...	BeFree	22737229	Detail

Annotation

Descrption	Source	Links
We also found that the HLA-DPA1 and HLA-DPB1 genes were significantly associated with protective eff...	DisGeNET	Detail

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs9277542 dbSNP
Genome: hg38
Position: chr6:33,087,470-33,087,470
Variant Type: snv
Reference Allele: T
Alternative Allele: C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): rs9277542
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 0.5774
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 9677
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 16760

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