LAT linker for activation of T cells

Information
Symbol
LAT
Type
protein-coding
Description
linker for activation of T cells
Entrez Gene ID
27040
Genome
hg19
Position
chr16:28,996,147-29,002,104
Genome
hg38
Position
chr16:28,984,826-28,990,783
MIM
602354 OMIM
HGNC
HGNC:18874 HGNC
Ensembl
ENSG00000213658 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Pathogenic 0 12
Benign 0 28
Likely benign 0 178
Conflicting classifications of pathogenicity 0 4
not provided 1 0
Uncertain significance 0 118
Ranking
ClinVar
0
0
30
300
4
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM IMD52
SYNONYM LAT1
SYNONYM pp36
MIM 602354 OMIM
HGNC HGNC:18874 HGNC
Ensembl ENSG00000213658 Ensembl
AllianceGenome HGNC:18874
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000454369.6 hg38 chr16 28,985,123 28,990,449 5,327
ENST00000360872.9 hg38 chr16 28,985,340 28,990,773 5,434
ENST00000566177.5 hg38 chr16 28,985,418 28,990,012 4,595
ENST00000395456.7 hg38 chr16 28,985,052 28,990,784 5,733
ENST00000564277.5 hg38 chr16 28,985,054 28,990,019 4,966
ENST00000395461.7 hg38 chr16 28,984,826 28,990,783 5,958
ENST00000395461.7 hg19 chr16 28,996,147 29,002,104 5,958
ENST00000395456.7 hg19 chr16 28,996,373 29,002,105 5,733
ENST00000564277.5 hg19 chr16 28,996,375 29,001,340 4,966
ENST00000454369.6 hg19 chr16 28,996,444 29,001,770 5,327
ENST00000360872.9 hg19 chr16 28,996,661 29,002,094 5,434
ENST00000566177.5 hg19 chr16 28,996,739 29,001,333 4,595
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