SOX2-OT SOX2 overlapping transcript

Information
Symbol
SOX2-OT
Type
ncRNA
Description
SOX2 overlapping transcript
Entrez Gene ID
347689
Genome
hg19
Position
chr3:180,707,567-181,460,672
Genome
hg38
Position
chr3:180,989,779-181,742,884
MIM
616338 OMIM
HGNC
HGNC:20209 HGNC
Ensembl
ENSG00000242808 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Pathogenic 2 0
Likely pathogenic 1 0
not provided 3 0
Ranking
ClinVar
0
0
0
0
0
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM NCRNA00043
SYNONYM SOX2OT
MIM 616338 OMIM
HGNC HGNC:20209 HGNC
Ensembl ENSG00000242808 Ensembl
AllianceGenome HGNC:20209
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000642301.2 hg38 chr3 181,699,510 181,741,189 41,680
ENST00000647055.1 hg38 chr3 180,989,775 181,023,250 33,476
ENST00000643769.1 hg38 chr3 181,610,469 181,614,654 4,186
ENST00000644358.1 hg38 chr3 181,723,193 181,740,840 17,648
ENST00000665485.1 hg38 chr3 181,056,709 181,741,290 684,582
ENST00000643236.2 hg38 chr3 180,989,771 181,741,401 751,631
ENST00000597347.5 hg38 chr3 181,174,890 181,700,044 525,155
ENST00000656613.1 hg38 chr3 180,989,779 181,742,884 753,106
ENST00000642652.2 hg38 chr3 181,610,492 181,740,802 130,311
ENST00000626948.3 hg38 chr3 180,989,770 181,791,029 801,260
ENST00000626619.2 hg38 chr3 181,699,619 181,739,761 40,143
ENST00000596250.7 hg38 chr3 181,699,223 181,742,892 43,670
ENST00000626299.4 hg38 chr3 181,699,598 181,836,880 137,283
ENST00000654538.1 hg38 chr3 180,989,793 181,742,448 752,656
ENST00000644582.1 hg38 chr3 181,175,169 181,632,180 457,012
ENST00000646683.1 hg38 chr3 180,989,816 181,740,820 751,005
ENST00000642922.1 hg38 chr3 180,989,787 181,031,971 42,185
ENST00000630553.1 hg38 chr3 181,699,599 181,836,831 137,233
ENST00000665187.1 hg38 chr3 180,989,779 181,742,884 753,106
ENST00000646949.2 hg38 chr3 180,989,773 181,740,778 751,006
ENST00000642685.1 hg38 chr3 181,610,524 181,673,402 62,879
ENST00000642218.1 hg38 chr3 181,698,644 181,740,765 42,122
ENST00000628810.2 hg38 chr3 181,699,837 181,740,823 40,987
ENST00000668295.3 hg38 chr3 180,989,766 181,118,567 128,802
ENST00000476964.6 hg38 chr3 181,610,334 181,742,313 131,980
ENST00000647034.2 hg38 chr3 181,726,992 181,742,470 15,479
ENST00000702225.1 hg38 chr3 180,989,793 181,117,486 127,694
ENST00000646508.1 hg38 chr3 180,989,790 181,130,996 141,207
ENST00000597347.5 hg19 chr3 180,892,678 181,417,832 525,155
ENST00000476964.6 hg19 chr3 181,328,122 181,460,101 131,980
ENST00000596250.7 hg19 chr3 181,417,011 181,460,680 43,670
ENST00000642301.2 hg19 chr3 181,417,298 181,458,977 41,680
ENST00000642218.1 hg19 chr3 181,416,432 181,458,553 42,122
ENST00000642652.2 hg19 chr3 181,328,280 181,458,590 130,311
ENST00000642685.1 hg19 chr3 181,328,312 181,391,190 62,879
ENST00000626948.3 hg19 chr3 180,707,558 181,508,817 801,260
ENST00000626619.2 hg19 chr3 181,417,407 181,457,549 40,143
ENST00000628810.2 hg19 chr3 181,417,625 181,458,611 40,987
ENST00000626299.4 hg19 chr3 181,417,386 181,554,668 137,283
ENST00000630553.1 hg19 chr3 181,417,387 181,554,619 137,233
ENST00000644358.1 hg19 chr3 181,440,981 181,458,628 17,648
ENST00000647034.2 hg19 chr3 181,444,780 181,460,258 15,479
ENST00000656613.1 hg19 chr3 180,707,567 181,460,672 753,106
ENST00000665187.1 hg19 chr3 180,707,567 181,460,672 753,106
ENST00000668295.3 hg19 chr3 180,707,554 180,836,355 128,802
ENST00000643236.2 hg19 chr3 180,707,559 181,459,189 751,631
ENST00000646949.2 hg19 chr3 180,707,561 181,458,566 751,006
ENST00000647055.1 hg19 chr3 180,707,563 180,741,038 33,476
ENST00000642922.1 hg19 chr3 180,707,575 180,749,759 42,185
ENST00000643769.1 hg19 chr3 181,328,257 181,332,442 4,186
ENST00000646508.1 hg19 chr3 180,707,578 180,848,784 141,207
ENST00000646683.1 hg19 chr3 180,707,604 181,458,608 751,005
ENST00000644582.1 hg19 chr3 180,892,957 181,349,968 457,012
ENST00000654538.1 hg19 chr3 180,707,581 181,460,236 752,656
ENST00000665485.1 hg19 chr3 180,774,497 181,459,078 684,582
ENST00000702225.1 hg19 chr3 180,707,581 180,835,274 127,694
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