LSP1 lymphocyte specific protein 1

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: LSP1
Type: protein-coding
Description: lymphocyte specific protein 1
Entrez Gene ID: 4046
Genome: hg19
Position: chr11:1,886,395-1,913,493
Genome: hg38
Position: chr11:1,865,165-1,892,263
MIM: 153432 OMIM
HGNC: HGNC:6707 HGNC
Ensembl: ENSG00000130592 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Benign	0	2
Likely benign	0	4
Uncertain significance	0	2

Ranking

	ClinVar
	0
	0
	0
	8
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	WP34
SYNONYM	pp52
MIM	153432 OMIM
HGNC	HGNC:6707 HGNC
Ensembl	ENSG00000130592 Ensembl
AllianceGenome	HGNC:6707

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000406638.6	hg38	chr11	1,870,244	1,892,263	22,020
ENST00000381775.5	hg38	chr11	1,865,165	1,892,263	27,099
ENST00000405957.6	hg38	chr11	1,868,673	1,892,263	23,591
ENST00000612798.4	hg38	chr11	1,870,252	1,892,263	22,012
ENST00000311604.8	hg38	chr11	1,853,084	1,892,263	39,180
ENST00000311604.8	hg19	chr11	1,874,314	1,913,493	39,180
ENST00000381775.5	hg19	chr11	1,886,395	1,913,493	27,099
ENST00000405957.6	hg19	chr11	1,889,903	1,913,493	23,591
ENST00000406638.6	hg19	chr11	1,891,474	1,913,493	22,020
ENST00000612798.4	hg19	chr11	1,891,482	1,913,493	22,012

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