ENST00000612798.4 LSP1
Information
- Transcript ID
- ENST00000612798.4
- Genome
- hg19
- Position
- chr11:1,891,482-1,913,493
- Strand
- +
- CDS length
- 834
- Amino acid length
- 278
- Gene symbol
- LSP1
- Gene type
- protein-coding
- Gene description
- lymphocyte specific protein 1
- Gene Entrez Gene ID
- 4046
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 1,891,482 | 1,891,891 |
| 2 | 1,901,317 | 1,901,454 |
| 3 | 1,902,662 | 1,902,826 |
| 4 | 1,904,649 | 1,904,790 |
| 5 | 1,905,162 | 1,905,254 |
| 6 | 1,905,510 | 1,905,553 |
| 7 | 1,905,730 | 1,905,811 |
| 8 | 1,907,962 | 1,908,096 |
| 9 | 1,908,467 | 1,908,544 |
| 10 | 1,908,704 | 1,908,806 |
| 11 | 1,913,003 | 1,913,493 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 1,901,450 | 1,901,454 |
| 3 | CDS | 1,902,662 | 1,902,826 |
| 4 | CDS | 1,904,649 | 1,904,790 |
| 5 | CDS | 1,905,162 | 1,905,254 |
| 6 | CDS | 1,905,510 | 1,905,553 |
| 7 | CDS | 1,905,730 | 1,905,811 |
| 8 | CDS | 1,907,962 | 1,908,096 |
| 9 | CDS | 1,908,467 | 1,908,544 |
| 10 | CDS | 1,908,704 | 1,908,793 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr11 | 1,870,252 | 1,892,263 | Link |
CDS sequence
ATGCTCCTCAGCCTGAAGCCCTCGGAGGCCCCTGAACTGGATGAGGACGAGGGCTTTGGCGACTGGTCCCAGAGGCCAGAGCAGCGGCAGCAGCACGAGGGGGCGCAGGGCGCCTTGGACAGCGGAGAGCCCCCCCAGTGCAGGAGTCCTGAGGGGGAGCAAGAGGACAGGCCCGGCCTGCATGCCTACGAAAAGGAGGACAGTGATGAAGTCCACCTGGAGGAGTTGAGTCTGAGCAAGGAGGGGCCAGGCCCAGAGGACACTGTCCAGGACAACCTGGGGGCCGCAGGGGCTGAGGAGGAACAGGAGGAGCACCAGAAATGTCAGCAGCCCAGGACACCCAGCCCCTTGGTCTTGGAGGGGACCATCGAACAGAGCTCGCCTCCCCTGAGCCCTACCACCAAACTCATCGACAGGACCGAGTCCCTAAACCGCTCCATAGAGAAGAGTAACAGTGTGAAGAAATCCCAGCCAGACTTGCCCATCTCCAAGATTGATCAGTGGCTGGAACAATACACCCAGGCCATCGAGACCGCTGGCCGGACCCCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGTGGCCAGTACCAAGAGTCGGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGGATATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCAGAAGGGAGGCTCCAAGACCTCATCAACAATTAAGAGCACCCCATCTGGGAAGAGGTATAAGTTTGTGGCCACCGGGCATGGGAAGTATGAGAAGGTGCTTGTGGAAGGGGGCCCGGCTCCCTAG
Amino sequence
MLLSLKPSEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQEDRPGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTPSPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQAIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSLWEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVEGGPAP*