ENST00000543190.5 LTBR
Information
- Transcript ID
- ENST00000543190.5
- Genome
- hg38
- Position
- chr12:6,384,253-6,388,506
- Strand
- +
- CDS length
- 225
- Amino acid length
- 75
- Gene symbol
- LTBR
- Gene type
- protein-coding
- Gene description
- lymphotoxin beta receptor
- Gene Entrez Gene ID
- 4055
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 6,384,253 | 6,384,454 |
| 2 | 6,384,588 | 6,384,684 |
| 3 | 6,385,022 | 6,385,147 |
| 4 | 6,385,227 | 6,385,379 |
| 5 | 6,386,347 | 6,386,444 |
| 6 | 6,388,398 | 6,388,506 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 4 | CDS | 6,385,229 | 6,385,379 |
| 5 | CDS | 6,386,347 | 6,386,420 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr12 | 6,493,419 | 6,497,672 | Link |
CDS sequence
ATGGGCCTCGAGGAGATTGCCCCCTGCACAAGCAAACGGAAGACCCAGTGCCGCTGCCAGCCGGGAATGTTCTGTGCTGCCTGGGCCCTCGAGTGTACACACTGCGAGCTACTTTCTGACTGCCCGCCTGGCACTGAAGCCGAGCTCAAAGGTGTGAGAACCAAGGTCTGGTGGAGGCAGCTCCAGGCACTGCCCAGTCCGACACAACCTGCAAAAATCCATTAG
Amino sequence
MGLEEIAPCTSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKGVRTKVWWRQLQALPSPTQPAKIH*