ENST00000396840.6 IFFO1

Information
Transcript ID
ENST00000396840.6
Genome
hg38
Position
chr12:6,539,528-6,556,071
Strand
-
CDS length
1,680
Amino acid length
560
Gene symbol
IFFO1
Gene type
protein-coding
Gene description
intermediate filament family orphan 1
Gene Entrez Gene ID
25900
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
9 6,539,528 6,540,588
8 6,541,512 6,541,642
7 6,548,065 6,548,157
6 6,548,425 6,548,545
5 6,548,668 6,548,825
4 6,549,756 6,549,896
3 6,550,695 6,550,790
2 6,550,941 6,551,001
1 6,555,257 6,556,071
CDS
Exon number Type Start Stop
9 CDS 6,540,483 6,540,588
8 CDS 6,541,512 6,541,642
7 CDS 6,548,065 6,548,157
6 CDS 6,548,425 6,548,545
5 CDS 6,548,668 6,548,825
4 CDS 6,549,756 6,549,896
3 CDS 6,550,695 6,550,790
2 CDS 6,550,941 6,551,001
1 CDS 6,555,257 6,556,029
Other genome
Genome Chromosome Start End Links
hg19 chr12 6,648,694 6,665,237 Link
CDS sequence
ATGAATCCGTTATTCGGCCCCAACCTCTTCCTCCTGCAGCAGGAGCAGCAGGGCCTGGCCGGGCCACTGGGGGACTCACTGGGAGGCGACCACTTCGCCGGGGGAGGAGACTTGCCCCCGGCGCCTCTCTCGCCGGCCGGCCCTGCTGCCTACTCGCCGCCCGGGCCGGGCCCGGCCCCGCCTGCCGCCATGGCCCTCCGCAATGACCTGGGCTCCAACATCAACGTGCTCAAGACCCTGAACCTCCGGTTCCGCTGCTTCCTGGCCAAGGTGCATGAGCTGGAGCGCCGGAACCGGCTGTTGGAGAAGCAACTGCAGCAAGCGCTGGAGGAGGGTAAGCAGGGCCGGCGGGGCCTGGGTCGTCGCGACCAGGCAGTGCAGACCGGCTTCGTCAGCCCCATCCGGCCCCTGGGGCTGCAGCTGGGCGCCCGGCCGGCCGCTGTCTGCAGCCCTTCGGCGCGCGTGCTGGGCTCGCCCGCGCGCTCCCCGGCCGGCCCCCTCGCGCCCTCCGCGGCCAGCCTCTCGTCGTCCTCCACCTCCACCTCCACCACCTATTCCTCGTCGGCCCGCTTCATGCCCGGCACCATCTGGTCGTTCTCGCACGCCCGCCGGCTCGGGCCGGGACTGGAGCCCACTCTGGTGCAAGGGCCTGGCTTGTCGTGGGTGCACCCGGATGGGGTGGGCGTCCAGATCGACACCATCACGCCCGAGATCCGCGCTCTCTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCGGAGGTGGGAAGAGGAGTACACGGTGCGGATCCAGCTGCAAGACCGTGTAAATGAGCTCCAGGAGGAAGCCCAGGAGGCTGATGCCTGCCAGGAGGAGCTGGCACTGAAGGTGGAACAGTTGAAGGCTGAGCTGGTGGTCTTCAAGGGGCTCATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGATATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAGGACATGATCCAGATGTTCCAGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAGCACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATGCCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGCTCCATGAGATAG
Amino sequence
MNPLFGPNLFLLQQEQQGLAGPLGDSLGGDHFAGGGDLPPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLGRRDQAVQTGFVSPIRPLGLQLGARPAAVCSPSARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQDRVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR*