ENST00000396840.6 IFFO1

Information
Transcript ID
ENST00000396840.6
Genome
hg19
Position
chr12:6,648,694-6,665,237
Strand
-
CDS length
1,680
Amino acid length
560
Gene symbol
IFFO1
Gene type
protein-coding
Gene description
intermediate filament family orphan 1
Gene Entrez Gene ID
25900
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
9 6,648,694 6,649,754
8 6,650,678 6,650,808
7 6,657,231 6,657,323
6 6,657,591 6,657,711
5 6,657,834 6,657,991
4 6,658,922 6,659,062
3 6,659,861 6,659,956
2 6,660,107 6,660,167
1 6,664,423 6,665,237
CDS
Exon number Type Start Stop
9 CDS 6,649,649 6,649,754
8 CDS 6,650,678 6,650,808
7 CDS 6,657,231 6,657,323
6 CDS 6,657,591 6,657,711
5 CDS 6,657,834 6,657,991
4 CDS 6,658,922 6,659,062
3 CDS 6,659,861 6,659,956
2 CDS 6,660,107 6,660,167
1 CDS 6,664,423 6,665,195
Other genome
Genome Chromosome Start End Links
hg38 chr12 6,539,528 6,556,071 Link
CDS sequence
ATGAATCCGTTATTCGGCCCCAACCTCTTCCTCCTGCAGCAGGAGCAGCAGGGCCTGGCCGGGCCACTGGGGGACTCACTGGGAGGCGACCACTTCGCCGGGGGAGGAGACTTGCCCCCGGCGCCTCTCTCGCCGGCCGGCCCTGCTGCCTACTCGCCGCCCGGGCCGGGCCCGGCCCCGCCTGCCGCCATGGCCCTCCGCAATGACCTGGGCTCCAACATCAACGTGCTCAAGACCCTGAACCTCCGGTTCCGCTGCTTCCTGGCCAAGGTGCATGAGCTGGAGCGCCGGAACCGGCTGTTGGAGAAGCAACTGCAGCAAGCGCTGGAGGAGGGTAAGCAGGGCCGGCGGGGCCTGGGTCGTCGCGACCAGGCAGTGCAGACCGGCTTCGTCAGCCCCATCCGGCCCCTGGGGCTGCAGCTGGGCGCCCGGCCGGCCGCTGTCTGCAGCCCTTCGGCGCGCGTGCTGGGCTCGCCCGCGCGCTCCCCGGCCGGCCCCCTCGCGCCCTCCGCGGCCAGCCTCTCGTCGTCCTCCACCTCCACCTCCACCACCTATTCCTCGTCGGCCCGCTTCATGCCCGGCACCATCTGGTCGTTCTCGCACGCCCGCCGGCTCGGGCCGGGACTGGAGCCCACTCTGGTGCAAGGGCCTGGCTTGTCGTGGGTGCACCCGGATGGGGTGGGCGTCCAGATCGACACCATCACGCCCGAGATCCGCGCTCTCTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCGGAGGTGGGAAGAGGAGTACACGGTGCGGATCCAGCTGCAAGACCGTGTAAATGAGCTCCAGGAGGAAGCCCAGGAGGCTGATGCCTGCCAGGAGGAGCTGGCACTGAAGGTGGAACAGTTGAAGGCTGAGCTGGTGGTCTTCAAGGGGCTCATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGATATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAGGACATGATCCAGATGTTCCAGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAGCACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATGCCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGCTCCATGAGATAG
Amino sequence
MNPLFGPNLFLLQQEQQGLAGPLGDSLGGDHFAGGGDLPPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLGRRDQAVQTGFVSPIRPLGLQLGARPAAVCSPSARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQDRVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR*