ENST00000465801.5 IFFO1
Information
- Transcript ID
- ENST00000465801.5
- Genome
- hg38
- Position
- chr12:6,538,961-6,551,900
- Strand
- -
- CDS length
- 768
- Amino acid length
- 256
- Gene symbol
- IFFO1
- Gene type
- protein-coding
- Gene description
- intermediate filament family orphan 1
- Gene Entrez Gene ID
- 25900
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 11 | 6,538,961 | 6,540,588 |
| 10 | 6,541,512 | 6,541,642 |
| 9 | 6,548,065 | 6,548,157 |
| 8 | 6,548,425 | 6,548,545 |
| 7 | 6,548,668 | 6,548,825 |
| 6 | 6,549,476 | 6,549,484 |
| 5 | 6,549,756 | 6,549,896 |
| 4 | 6,550,695 | 6,550,790 |
| 3 | 6,550,941 | 6,551,001 |
| 2 | 6,551,398 | 6,551,503 |
| 1 | 6,551,595 | 6,551,900 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 11 | CDS | 6,540,483 | 6,540,588 |
| 10 | CDS | 6,541,512 | 6,541,642 |
| 9 | CDS | 6,548,065 | 6,548,157 |
| 8 | CDS | 6,548,425 | 6,548,545 |
| 7 | CDS | 6,548,668 | 6,548,825 |
| 6 | CDS | 6,549,476 | 6,549,484 |
| 5 | CDS | 6,549,756 | 6,549,896 |
| 4 | CDS | 6,550,695 | 6,550,703 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr12 | 6,648,127 | 6,661,066 | Link |
CDS sequence
ATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGATATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAGGACATGATCCAGATGTTCCAGAAGAAGCTGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAGCACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATGCCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGCTCCATGAGATAG
Amino sequence
MSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQKKLVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR*