ENST00000465801.5 IFFO1
Information
- Transcript ID
- ENST00000465801.5
- Genome
- hg19
- Position
- chr12:6,648,127-6,661,066
- Strand
- -
- CDS length
- 768
- Amino acid length
- 256
- Gene symbol
- IFFO1
- Gene type
- protein-coding
- Gene description
- intermediate filament family orphan 1
- Gene Entrez Gene ID
- 25900
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 11 | 6,648,127 | 6,649,754 |
| 10 | 6,650,678 | 6,650,808 |
| 9 | 6,657,231 | 6,657,323 |
| 8 | 6,657,591 | 6,657,711 |
| 7 | 6,657,834 | 6,657,991 |
| 6 | 6,658,642 | 6,658,650 |
| 5 | 6,658,922 | 6,659,062 |
| 4 | 6,659,861 | 6,659,956 |
| 3 | 6,660,107 | 6,660,167 |
| 2 | 6,660,564 | 6,660,669 |
| 1 | 6,660,761 | 6,661,066 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 11 | CDS | 6,649,649 | 6,649,754 |
| 10 | CDS | 6,650,678 | 6,650,808 |
| 9 | CDS | 6,657,231 | 6,657,323 |
| 8 | CDS | 6,657,591 | 6,657,711 |
| 7 | CDS | 6,657,834 | 6,657,991 |
| 6 | CDS | 6,658,642 | 6,658,650 |
| 5 | CDS | 6,658,922 | 6,659,062 |
| 4 | CDS | 6,659,861 | 6,659,869 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr12 | 6,538,961 | 6,551,900 | Link |
CDS sequence
ATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGATATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAGGACATGATCCAGATGTTCCAGAAGAAGCTGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAGCACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATGCCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGCTCCATGAGATAG
Amino sequence
MSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQKKLVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR*