ENST00000427562.6 LAMP5
Information
- Transcript ID
- ENST00000427562.6
- Genome
- hg38
- Position
- chr20:9,514,358-9,529,923
- Strand
- +
- CDS length
- 711
- Amino acid length
- 237
- Gene symbol
- LAMP5
- Gene type
- protein-coding
- Gene description
- lysosomal associated membrane protein family member 5
- Gene Entrez Gene ID
- 24141
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 9,514,358 | 9,514,916 |
| 2 | 9,515,453 | 9,515,625 |
| 3 | 9,516,256 | 9,516,361 |
| 4 | 9,518,040 | 9,518,228 |
| 5 | 9,529,642 | 9,529,923 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 9,514,853 | 9,514,916 |
| 2 | CDS | 9,515,453 | 9,515,625 |
| 3 | CDS | 9,516,256 | 9,516,361 |
| 4 | CDS | 9,518,040 | 9,518,228 |
| 5 | CDS | 9,529,642 | 9,529,820 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr20 | 9,495,005 | 9,510,570 | Link |
CDS sequence
ATGGATCTCCAAGGAAGAGGGGTCCCCAGCATCGACAGACTTCGAGTTCTCCTGATGTTGTTCCATACAATGGCTCAAATCATGGCAGAACAAGAAGTGGAAAATCTCTCAGGCCTTTCCACTAACCCTGAAAAAGATATATTTGTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTATGATGTGTGGGCCAGCAACTACGTAGATGAAAGCCACAACATGTCCAAGGGACCTGAGGCGACTTGGAGGCTGAGCAAAGTGCAGTTTGTCTACGACTCCTCGGAGAAAACCCACTTCAAAGACGCAGTCAGTGCTGGGAAGCACACAGCCAACTCGCACCACCTCTCTGCCTTGGTCACCCCCGCTGGGAAGTCCTATGAGTGTCAAGCTCAACAAACCATTTCACTGGCCTCTAGTGATCCGCAGAAGACGGTCACCATGATCCTGTCTGCGGTCCACATCCAACCTTTTGACATTATCTCAGATTTTGTCTTCAGTGAAGAGCATAAATGCCCAGTGGATGAGCGGGAGCAACTGGAAGAAACCTTGCCCCTGATTTTGGGGCTCATCTTGGGCCTCGTCATCATGGTAACACTCGCGATTTACCACGTCCACCACAAAATGACTGCCAACCAGGTGCAGATCCCTCGGGACAGATCCCAGTATAAGCACATGGGCTAG
Amino sequence
MDLQGRGVPSIDRLRVLLMLFHTMAQIMAEQEVENLSGLSTNPEKDIFVVRENGTTCLMAEFAAKFIVPYDVWASNYVDESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKCPVDEREQLEETLPLILGLILGLVIMVTLAIYHVHHKMTANQVQIPRDRSQYKHMG*