ENST00000443724.5 SGO1
Information
- Transcript ID
- ENST00000443724.5
- Genome
- hg19
- Position
- chr3:20,202,501-20,227,619
- Strand
- -
- CDS length
- 648
- Amino acid length
- 216
- Gene symbol
- SGO1
- Gene type
- protein-coding
- Gene description
- shugoshin 1
- Gene Entrez Gene ID
- 151648
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 7 | 20,202,501 | 20,202,718 |
| 6 | 20,216,497 | 20,216,547 |
| 5 | 20,218,093 | 20,218,151 |
| 4 | 20,219,763 | 20,219,839 |
| 3 | 20,225,100 | 20,225,296 |
| 2 | 20,225,378 | 20,225,526 |
| 1 | 20,227,440 | 20,227,619 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 7 | CDS | 20,202,597 | 20,202,718 |
| 6 | CDS | 20,216,497 | 20,216,547 |
| 5 | CDS | 20,218,093 | 20,218,151 |
| 4 | CDS | 20,219,763 | 20,219,839 |
| 3 | CDS | 20,225,100 | 20,225,296 |
| 2 | CDS | 20,225,378 | 20,225,519 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr3 | 20,161,009 | 20,186,127 | Link |
CDS sequence
ATGGCCAAGGAAAGATGCCTGAAAAAGTCCTTTCAAGATAGTCTTGAAGACATAAAGAAGCGAATGAAAGAGAAAAGGAATAAAAACTTGGCAGAGATTGGCAAACGCAGGTCTTTTATAGCTGCACCATGCCAAATAATCACCAACACTTCTACACTGCTGAAAAATTACCAAGACAACAACAAAATGTTAGTTTTAGCTTTGGAAAATGAAAAATCCAAAGTGAAAGAAGCCCAAGATATCATCCTACAGCTGAGAAAAGAATGTTACTATCTCACATGTCAGCTATATGCATTGAAAGGAAAACTTACATCACAACAAACAGTAGAACCTGCTCAGAACCAGGAAATATGTTCCTCTGGAATGGACCCCAATAGTGATGACAGCTCCAGAAATTTATTTGTGAAGGATTTACCGCAAATTCCTCTTGAAGAAACTGAACTTCCAGGACAAGGAGAATCATTTCAAATAGAAGATCAGATACCTACTATTCCTCAAGACACACTGGGAGTTGATTTTGATTCAGGAGCCCTGGAGGTATCACCTGCCAAAGAAGCAATTTTTATTTTATATTATGTTCGAGAATTTGTTTCGAGATTCCCAGACTGTAGGAAATGTAAACTTGAAACCCACATCTGCTTGAGGTAA
Amino sequence
MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGALEVSPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR*