ENST00000412997.6 SGO1

Information
Transcript ID
ENST00000412997.6
Genome
hg19
Position
chr3:20,210,976-20,227,698
Strand
-
CDS length
1,584
Amino acid length
528
Gene symbol
SGO1
Gene type
protein-coding
Gene description
shugoshin 1
Gene Entrez Gene ID
151648
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
8 20,210,976 20,212,307
7 20,212,535 20,212,724
6 20,215,741 20,216,547
5 20,218,093 20,218,151
4 20,219,763 20,219,839
3 20,225,100 20,225,296
2 20,225,378 20,225,526
1 20,227,440 20,227,698
CDS
Exon number Type Start Stop
8 CDS 20,212,196 20,212,307
7 CDS 20,212,535 20,212,724
6 CDS 20,215,741 20,216,547
5 CDS 20,218,093 20,218,151
4 CDS 20,219,763 20,219,839
3 CDS 20,225,100 20,225,296
2 CDS 20,225,378 20,225,519
Other genome
Genome Chromosome Start End Links
hg38 chr3 20,169,484 20,186,206 Link
CDS sequence
ATGGCCAAGGAAAGATGCCTGAAAAAGTCCTTTCAAGATAGTCTTGAAGACATAAAGAAGCGAATGAAAGAGAAAAGGAATAAAAACTTGGCAGAGATTGGCAAACGCAGGTCTTTTATAGCTGCACCATGCCAAATAATCACCAACACTTCTACACTGCTGAAAAATTACCAAGACAACAACAAAATGTTAGTTTTAGCTTTGGAAAATGAAAAATCCAAAGTGAAAGAAGCCCAAGATATCATCCTACAGCTGAGAAAAGAATGTTACTATCTCACATGTCAGCTATATGCATTGAAAGGAAAACTTACATCACAACAAACAGTAGAACCTGCTCAGAACCAGGAAATATGTTCCTCTGGAATGGACCCCAATAGTGATGACAGCTCCAGAAATTTATTTGTGAAGGATTTACCGCAAATTCCTCTTGAAGAAACTGAACTTCCAGGACAAGGAGAATCATTTCAAATAGAAGATCAGATACCTACTATTCCTCAAGACACACTGGGAGTTGATTTTGATTCAGGTGAAGCTAAGTCTACTGATAATGTCTTACCTAGAACTGTATCTGTTCGTAGCAGTTTAAAGAAACATTGTAACAGTATATGTCAGTTTGATAGCTTGGATGATTTTGAAACCAGTCATTTGGCAGGGAAGTCTTTTGAATTCGAAAGAGTTGGATTTTTAGACCCACTAGTAAACATGCACATACCTGAAAATGTACAACACAATGCTTGTCAATGGAGCAAGGACCAAGTTAACTTATCACCAAAGCTGATTCAGCCAGGAACGTTTACTAAAACAAAAGAAGACATTTTAGAATCTAAATCTGAACAAACTAAAAGTAAGCAAAGAGATACACAAGAAAGAAAAAGAGAAGAGAAAAGAAAAGCTAACAGGAGAAAATCAAAACGTATGTCAAAATATAAAGAGAATAAAAGCGAAAATAAAAAAACTGTTCCCCAAAAAAAAATGCACAAATCTGTCAGTTCCAATGATGCTTACAATTTTAATTTGGAAGAGGGTGTTCATCTTACTCCTTTCCGACAAAAAGTGAGCAATGACTCTAATAGAGAAGAAAACAACGAGTCTGAAGTGAGCCTCTGTGAATCAAGTGGTTCAGGAGATGATTCCGATGACCTCTATTTGCCCACTTGCAAGTACATTCAGAATCCCACGAGCAATTCAGATAGACCAGTCACCAGGCCTCTAGCTAAAAGAGCACTGAAATACACAGATGAAAAAGAGACGGAGGGTTCTAAGCCAACAAAAACTCCTACCACTACACCACCTGAAACTCAGCAGTCACCTCATCTTAGCCTGAAGGATATCACCAATGTCTCCTTGTATCCTGTTGTGAAAATCAGAAGACTTTCTCTTTCTCCAAAAAAGAATAAAGCAAGCCCAGCAGTGGCTCTGCCTAAACGTAGGTGCACAGCCAGCGTGAACTATAAGGAGCCCACCCTCGCTTCGAAACTGAGAAGAGGGGACCCTTTTACAGATTTGTGTTTTTTGAATTCTCCTATTTTCAAGCAGAAAAAGGATTTGAGACGTTCTAAAAAAAGTATGAAACAAATACAATGA
Amino sequence
MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKSTDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPENVQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREENNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGSKPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ*