ENST00000436744.2 NICN1
Information
- Transcript ID
- ENST00000436744.2
- Genome
- hg19
- Position
- chr3:49,461,610-49,466,759
- Strand
- -
- CDS length
- 528
- Amino acid length
- 176
- Gene symbol
- NICN1
- Gene type
- protein-coding
- Gene description
- nicolin 1, tubulin polyglutamylase complex subunit
- Gene Entrez Gene ID
- 84276
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 49,461,610 | 49,462,307 |
| 4 | 49,462,382 | 49,462,486 |
| 3 | 49,462,800 | 49,462,871 |
| 2 | 49,463,685 | 49,463,861 |
| 1 | 49,466,541 | 49,466,759 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 49,462,266 | 49,462,307 |
| 4 | CDS | 49,462,382 | 49,462,486 |
| 3 | CDS | 49,462,800 | 49,462,871 |
| 2 | CDS | 49,463,685 | 49,463,861 |
| 1 | CDS | 49,466,541 | 49,466,672 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr3 | 49,424,177 | 49,429,326 | Link |
CDS sequence
ATGTCCCGCGTTTTGGTGCCTTGCCATGTGAAAGGCTCCGTAGCCCTCCAGGTGGGCGACGTGCGGACCTCCCAAGGCCGGCCTGGCGTGCTGGTCATCGATGTCACCTTCCCCAGCGTCGCTCCCTTCGAGTTGCAGGAAATCACGTTTAAGAATTACTACACAGCTTTTTTGAGCATCCGTGTCCGTCAGTACACCTCAGCACACACACCTGCCAAGTGGGTGACCTGCCTGCGGGACTACTGCCTAATGCCTGACCCACACAGTGAGGAGGGAGCCCAGGAGTATGTATCGCTGTTCAAGCATCAGAGCCCCTCCGTGACCTTTCCCAAGTGGCTCTCCCACCCAGTGCCCTGTGAGCAACCTGCACTCCTCCGTGAGGGTCTCCCAGACCCCAGCAGGGTATCCTCCGAGGTGCAGCAGATGTGGGCACTGACAGAGATGATCCGGGCCAGTCACACCTCCGCAAGGATCGGCCGCTTTGATGTGGATGGCTGTTATGACCTGAACTTGCTCTCCTACACTTGA
Amino sequence
MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQMWALTEMIRASHTSARIGRFDVDGCYDLNLLSYT*