ENST00000507846.5 PCDH18
Information
- Transcript ID
- ENST00000507846.5
- Genome
- hg19
- Position
- chr4:138,440,857-138,453,648
- Strand
- -
- CDS length
- 2,745
- Amino acid length
- 915
- Gene symbol
- PCDH18
- Gene type
- protein-coding
- Gene description
- protocadherin 18
- Gene Entrez Gene ID
- 54510
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 138,440,857 | 138,442,850 |
| 4 | 138,449,632 | 138,449,795 |
| 3 | 138,449,886 | 138,449,971 |
| 2 | 138,450,756 | 138,452,896 |
| 1 | 138,453,409 | 138,453,648 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 138,442,183 | 138,442,850 |
| 4 | CDS | 138,449,632 | 138,449,795 |
| 3 | CDS | 138,449,886 | 138,449,971 |
| 2 | CDS | 138,450,756 | 138,452,582 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr4 | 137,519,703 | 137,532,494 | Link |
CDS sequence
ATGGGAGTACCTCAGAGGTCTGGCTCATCCATACTAAAAATAAGCATTTCAGACTCCAATGACAACAGCCCTGCTTTTGAGCAGCAATCTTATATAATACAACTCTTAGAAAACTCCCCGGTTGGCACTTTGCTCTTAGATCTGAATGCCACGGATCCAGATGAGGGCGCTAATGGGAAAATTGTATATTCCTTCAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTTAAAATTGATTCTGAAAGAGGACATTTGACTCTTTTCAAGCAAGTGGATTATGAAATCACCAAATCCTATGAGATTGATGTTCAGGCTCAAGATTTGGGTCCAAATTCAATCCCAGCCCATTGCAAAATTATAATTAAGGTTGTGGATGTTAATGACAATAAACCTGAAATTAACATCAACCTCATGTCCCCTGGAAAAGAAGAAATATCTTATATTTTTGAAGGGGATCCTATTGATACATTTGTTGCTTTGGTCAGAGTTCAGGACAAGGATTCTGGGCTGAATGGAGAAATAGTTTGTAAGCTTCATGGACATGGTCACTTTAAACTTCAGAAGACATATGAAAACAATTATTTAATCTTAACTAATGCCACACTGGATAGAGAAAAGAGATCTGAGTATAGTTTGACTGTAATCGCTGAGGACAGGGGGACACCCAGTCTCTCTACAGTGAAACATTTTACAGTTCAAATCAATGATATCAATGACAATCCACCCCACTTCCAGAGAAGCCGATATGAATTTGTAATTTCAGAAAATAACTCACCAGGGGCATATATCACCACTGTTACAGCCACAGATCCTGATCTTGGAGAAAATGGGCAAGTGACATACACCATCTTGGAGAGTTTTATTCTAGGAAGTTCCATAACTACATATGTAACCATTGACCCATCTAATGGAGCCATCTATGCCCTCAGAATCTTTGATCATGAAGAAGTGAGTCAGATCACTTTTGTGGTAGAAGCAAGAGATGGAGGAAGCCCGAAGCAACTGGTAAGCAATACCACAGTTGTGCTCACCATCATTGACGAAAATGACAACGTTCCTGTGGTTATAGGGCCTGCATTGCGTAATAATACGGCAGAAATCACCATTCCCAAAGGGGCTGAAAGTGGCTTTCATGTCACAAGAATAAGGGCAATTGACAGAGACTCTGGTGTGAATGCTGAACTCAGCTGCGCCATAGTAGCAGGTAATGAGGAGAATATCTTCATAATTGATCCACGATCATGTGACATCCATACCAACGTTAGCATGGATTCTGTTCCCTACACAGAATGGGAGCTGTCAGTTATCATTCAGGACAAAGGCAATCCTCAGCTACATACCAAAGTCCTTCTGAAGTGCATGATCTTTGAATATGCAGAGTCGGTGACAAGTACAGCAATGACTTCAGTAAGCCAGGCATCCTTGGATGTCTCCATGATAATAATTATTTCCTTAGGAGCAATTTGTGCAGTGTTGCTGGTTATTATGGTGCTATTTGCAACTAGGTGTAACCGCGAGAAGAAAGACACTAGATCCTATAACTGCAGGGTGGCCGAATCAACTTACCAGCACCACCCAAAAAGGCCATCCCGGCAGATTCACAAAGGGGACATCACATTGGTGCCTACCATAAATGGCACTCTGCCCATCAGATCTCATCACAGATCGTCTCCATCTTCATCTCCTACCTTAGAAAGAGGGCAGATGGGCAGCCGGCAGAGTCACAACAGTCACCAGTCACTCAACAGTTTGGTGACAATCTCATCAAACCACGTGCCAGAGAATTTCTCATTAGAACTCACCCACGCCACTCCTGCTGTTGAGGTCTCTCAGCTTCTTTCAATGCTTCACCAGGGGCAATATCAGCCAAGACCAAGTTTTCGAGGAAACAAATATTCCAGGAGCTACAGATATGCCCTTCAAGACATGGACAAATTTAGCTTGAAAGACAGTGGCCGTGGTGACAGTGAGGCAGGAGACAGTGATTATGATTTGGGGCGAGATTCTCCAATAGATAGGCTGTTGGGTGAAGGATTCAGCGACCTGTTTCTCACAGATGGAAGAATTCCAGCAGCTATGAGACTCTGCACGGAGGAGTGCAGGGTCCTGGGACACTCTGACCAGTGCTGGATGCCACCACTGCCCTCACCGTCTTCTGATTATAGGAGTAACATGTTCATTCCAGGGGAAGAATTCCCAACGCAACCCCAGCAGCAGCATCCACATCAGAGTCTTGAGGATGACGCTCAGCCTGCAGATTCCGGTGAAAAGAAGAAGAGTTTTTCCACCTTTGGAAAGGACTCCCCAAACGATGAGGACACTGGGGATACCAGCACATCATCTCTGCTCTCGGAAATGAGCAGTGTGTTCCAGCGTCTCTTACCGCCTTCCCTGGACACCTATTCTGAATGCAGTGAGGTGGATCGGTCCAACTCCCTGGAGCGCAGGAAGGGACCCTTGCCAGCCAAAACTGTGGGTTACCCACAGGGGGTAGCGGCATGGGCAGCCAGTACGCATTTTCAAAATCCCACCACCAACTGTGGGCCGCCACTTGGAACTCACTCCAGTGTGCAGCCTTCTTCAAAATGGCTGCCAGCCATGGAGGAGATCCCTGAAAATTATGAGGAAGATGATTTTGACAATGTGCTCAACCACCTCAATGATGGGAAACACGAACTCATGGATGCCAGTGAACTGGTGGCAGAGATTAACAAACTGCTTCAAGATGTCCGCCAGAGCTAG
Amino sequence
MGVPQRSGSSILKISISDSNDNSPAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIMETFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTNATLDREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGAYITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTRIRAIDRDSGVNAELSCAIVAGNEENIFIIDPRSCDIHTNVSMDSVPYTEWELSVIIQDKGNPQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVSQLLSMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPTQPQQQHPHQSLEDDAQPADSGEKKKSFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRLLPPSLDTYSECSEVDRSNSLERRKGPLPAKTVGYPQGVAAWAASTHFQNPTTNCGPPLGTHSSVQPSSKWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASELVAEINKLLQDVRQS*