ENST00000288390.2 SPATS1
Information
- Transcript ID
- ENST00000288390.2
- Genome
- hg19
- Position
- chr6:44,310,486-44,344,904
- Strand
- +
- CDS length
- 903
- Amino acid length
- 301
- Gene symbol
- SPATS1
- Gene type
- protein-coding
- Gene description
- spermatogenesis associated serine rich 1
- Gene Entrez Gene ID
- 221409
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 44,310,486 | 44,310,971 |
| 2 | 44,320,463 | 44,320,610 |
| 3 | 44,328,183 | 44,328,307 |
| 4 | 44,329,568 | 44,329,729 |
| 5 | 44,336,116 | 44,336,236 |
| 6 | 44,337,788 | 44,337,850 |
| 7 | 44,344,095 | 44,344,210 |
| 8 | 44,344,772 | 44,344,904 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 44,310,833 | 44,310,971 |
| 2 | CDS | 44,320,463 | 44,320,610 |
| 3 | CDS | 44,328,183 | 44,328,307 |
| 4 | CDS | 44,329,568 | 44,329,729 |
| 5 | CDS | 44,336,116 | 44,336,236 |
| 6 | CDS | 44,337,788 | 44,337,850 |
| 7 | CDS | 44,344,095 | 44,344,210 |
| 8 | CDS | 44,344,772 | 44,344,800 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr6 | 44,342,749 | 44,377,167 | Link |
CDS sequence
ATGAGTCCATCCATGCTCACTGGAAACAGTCCACGGGGCTGCCGTCTCCCCTCCATCTCAAGCACGACCTGCGGCAGACAGCTGGAGAAGGTTCCAGAAAAAAGGGACTCTGGCATGACCGAGGTGGAGAGGACCTACAGTGCTAATTGCAGTGATTTTCTGGAATCTAAGGGATGTTTTGCCAACACAACACCCTCTGGCAAAAGTGTCAGTTCCTCATCTTCTGTGGAAACAGGCCCAAGTGTCAGTGAGCCTCCTGGCCTCCCCAGAGTGTCTGCTTACGTAGACACCACTGCTGACTTGGATCGGAAACTCTCCTTCTCACATTCTGATCACTCCTCTGAAATGTCGTTGCCTGAAGTCCAAAAGGATAAATATCCTGAGGAATTCAGCCTGCTTAAGTTGCAGACGAAAGATGGGCATCGTCCTGAGTGGACATTTTACCCAAGGTTTAGCAGCAACATCCACACCTACCACGTCGGAAAGCAGTGCTTCTTTAATGGAGTCTTCCTCGGCAACAAGAGGTCTCTATCAGAGAGGACGGTGGACAAGTGCTTTGGGAGAAAGAAATACGATATTGATCCCAGGAATGGAATCCCAAAGTTAACTCCAGGCGACAATCCATATATGTACCCAGAACAGAGTAAAGGCTTCCACAAAGCAGGATCAATGCTCCCACCAGTGAATTTTTCAATAGTGCCTTATGAAAAGAAATTTGATACATTTATTCCACTTGAGCCTCTTCCACAAATTCCCAACTTGCCTTTCTGGGTGAAGGAGAAGGCCAACAGTTTGAAAAATGAGATACAAGAGGTTGAGGAGCTTGACAACTGGCAGCCAGCAGTGCCCTTAATGCACATGCTACACCTTTCTGGTGCTTTGGACTTTCCAAGACAATCCTGA
Amino sequence
MSPSMLTGNSPRGCRLPSISSTTCGRQLEKVPEKRDSGMTEVERTYSANCSDFLESKGCFANTTPSGKSVSSSSSVETGPSVSEPPGLPRVSAYVDTTADLDRKLSFSHSDHSSEMSLPEVQKDKYPEEFSLLKLQTKDGHRPEWTFYPRFSSNIHTYHVGKQCFFNGVFLGNKRSLSERTVDKCFGRKKYDIDPRNGIPKLTPGDNPYMYPEQSKGFHKAGSMLPPVNFSIVPYEKKFDTFIPLEPLPQIPNLPFWVKEKANSLKNEIQEVEELDNWQPAVPLMHMLHLSGALDFPRQS*