ENST00000445902.3 VPS52

Information
Transcript ID
ENST00000445902.3
Genome
hg38
Position
chr6:33,250,278-33,271,876
Strand
-
CDS length
2,172
Amino acid length
724
Gene symbol
VPS52
Gene type
protein-coding
Gene description
VPS52 subunit of GARP complex
Gene Entrez Gene ID
6293
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
20 33,250,278 33,250,987
19 33,251,518 33,251,636
18 33,251,860 33,251,971
17 33,263,484 33,263,549
16 33,263,772 33,263,879
15 33,264,008 33,264,103
14 33,264,374 33,264,497
13 33,264,782 33,264,900
12 33,266,557 33,266,712
11 33,267,188 33,267,321
10 33,267,682 33,267,739
9 33,267,865 33,267,997
8 33,268,108 33,268,208
7 33,268,499 33,268,649
6 33,269,014 33,269,189
5 33,269,490 33,269,557
4 33,269,744 33,269,819
3 33,269,999 33,270,051
2 33,270,199 33,270,283
1 33,271,586 33,271,876
CDS
Exon number Type Start Stop
20 CDS 33,250,841 33,250,987
19 CDS 33,251,518 33,251,636
18 CDS 33,251,860 33,251,971
17 CDS 33,263,484 33,263,549
16 CDS 33,263,772 33,263,879
15 CDS 33,264,008 33,264,103
14 CDS 33,264,374 33,264,497
13 CDS 33,264,782 33,264,900
12 CDS 33,266,557 33,266,712
11 CDS 33,267,188 33,267,321
10 CDS 33,267,682 33,267,739
9 CDS 33,267,865 33,267,997
8 CDS 33,268,108 33,268,208
7 CDS 33,268,499 33,268,649
6 CDS 33,269,014 33,269,189
5 CDS 33,269,490 33,269,557
4 CDS 33,269,744 33,269,819
3 CDS 33,269,999 33,270,051
2 CDS 33,270,199 33,270,283
1 CDS 33,271,586 33,271,675
Other genome
Genome Chromosome Start End Links
hg19 chr6 33,218,055 33,239,653 Link
CDS sequence
ATGGCCGCCGCTGCGACCATGGCGGCTGCGGCCCGGGAACTGGTGTTGCGGGCTGGGACCTCAGATATGGAGGAGGAAGAGGGCCCGCTGGCGGGTGGTCCTGGGCTCCAGGAACCACTGCAACTTGGGGAGTTGGATATCACTTCTGATGAATTCATCCTGGATGAAGTGGATGTTCACATTCAGGCAAATCTGGAGGATGAGTTAGTAAAGGAAGCTCTTAAAACGGGTGTAGATCTCCGTCACTATTCAAAGCAAGTTGAGCTGGAGCTACAGCAGATTGAACAGAAATCCATTCGGGATTATATTCAAGAGAGTGAGAATATAGCATCTCTACACAACCAGATCACAGCCTGTGATGCTGTCCTGGAGCGAATGGAGCAGATGTTGGGAGCTTTTCAGAGTGACCTCAGCTCCATCAGCTCTGAGATCCGGACACTGCAGGAACAGTCAGGAGCCATGAACATTCGACTTCGAAATCGCCAGGCAGTTCGGGGGAAACTTGGGGAGCTTGTTGATGGTCTGGTGGTGCCTTCTGCTCTGGTCACGGCAATTCTGGAGGCTCCAGTGACAGAGCCCAGGTTCTTGGAGCAGCTACAGGAGCTGGATGCCAAGGCAGCCGCAGTCAGAGAGCAGGAAGCTAGAGGCACAGCAGCCTGCGCAGATGTCAGAGGCGTGCTCGATCGGCTCCGGGTCAAGGCAGTGACGAAGATCCGAGAGTTTATCCTCCAGAAGATTTATTCCTTCAGGAAACCCATGACCAACTATCAGATCCCCCAGACGGCCCTGCTGAAGTACAGGTTCTTCTATCAGTTTCTGCTGGGCAATGAACGAGCAACAGCAAAGGAGATCAGGGATGAATATGTGGAGACGCTGAGCAAGATTTACCTGTCTTACTACCGCTCTTACCTGGGGCGGCTCATGAAGGTGCAGTATGAGGAAGTCGCTGAGAAAGATGATCTAATGGGTGTGGAAGATACAGCAAAGAAAGGATTCTTCTCAAAGCCATCGCTCCGCAGCAGGAACACCATTTTCACCCTAGGAACCCGCGGCTCTGTCATCTCCCCCACTGAACTTGAGGCCCCCATCCTGGTGCCTCACACAGCGCAGCGCGGAGAGCAGAGGTATCCATTTGAGGCCCTCTTCCGCAGCCAGCACTACGCCCTCCTAGACAATTCCTGCCGCGAATACCTTTTCATCTGTGAATTTTTTGTTGTGTCTGGCCCAGCTGCACACGACCTGTTCCATGCTGTCATGGGCCGTACACTCAGCATGACCCTGAAACACCTGGATTCTTATCTAGCTGACTGCTACGATGCCATTGCTGTTTTTCTCTGTATCCACATTGTTCTCCGGTTCCGTAACATTGCAGCAAAGAGGGATGTTCCTGCCCTGGACAGGTACTGGGAACAGGTGCTTGCCTTGCTATGGCCACGGTTTGAACTGATCCTGGAGATGAATGTTCAGAGCGTCCGAAGCACTGACCCCCAGCGCCTAGGGGGGTTGGATACTCGGCCCCACTATATCACACGCCGCTATGCAGAGTTCTCCTCCGCTCTTGTCAGTATCAACCAGACAATTCCTAATGAACGGACCATGCAATTGCTGGGACAGCTGCAGGTGGAGGTGGAGAATTTTGTCCTCCGAGTGGCAGCTGAGTTCTCCTCAAGGAAGGAGCAGCTTGTGTTTCTGATCAACAACTATGACATGATGCTGGGTGTGCTGATGGAGCGGGCTGCAGATGACAGCAAAGAGGTTGAGAGCTTCCAGCAGCTGCTCAATGCTCGGACACAGGAATTCATTGAAGAGTTGCTGTCTCCCCCTTTTGGGGGTTTAGTGGCATTTGTGAAGGAGGCTGAGGCTTTGATTGAGCGTGGACAGGCTGAGCGACTTCGAGGGGAAGAAGCCCGGGTAACTCAGCTGATCCGTGGCTTTGGTAGTTCCTGGAAATCATCAGTGGAATCTCTGAGTCAGGATGTAATGCGGAGTTTCACCAACTTCAGAAATGGCACCAGTATCATTCAGGGAGCGCTGACCCAGCTGATCCAGCTCTATCATCGCTTCCACCGGGTGCTGTCCCAGCCGCAGCTCCGAGCCCTCCCTGCCCGGGCTGAGCTCATCAACATTCACCACCTTATGGTGGAGCTCAAGAAGCATAAGCCCAACTTCTGA
Amino sequence
MAAAATMAAAARELVLRAGTSDMEEEEGPLAGGPGLQEPLQLGELDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAHDLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKPNF*