ENST00000576112.2 TSR1
Information
- Transcript ID
- ENST00000576112.2
- Genome
- hg19
- Position
- chr17:2,236,684-2,239,751
- Strand
- -
- CDS length
- 1,107
- Amino acid length
- 369
- Gene symbol
- TSR1
- Gene type
- protein-coding
- Gene description
- TSR1 ribosome maturation factor
- Gene Entrez Gene ID
- 55720
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 6 | 2,236,684 | 2,237,010 |
| 5 | 2,237,766 | 2,238,190 |
| 4 | 2,238,602 | 2,238,688 |
| 3 | 2,238,805 | 2,239,024 |
| 2 | 2,239,331 | 2,239,434 |
| 1 | 2,239,625 | 2,239,751 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 6 | CDS | 2,236,837 | 2,237,010 |
| 5 | CDS | 2,237,766 | 2,238,190 |
| 4 | CDS | 2,238,602 | 2,238,688 |
| 3 | CDS | 2,238,805 | 2,239,024 |
| 2 | CDS | 2,239,331 | 2,239,434 |
| 1 | CDS | 2,239,625 | 2,239,721 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr17 | 2,333,390 | 2,336,457 | Link |
CDS sequence
ATGGCGGCCCACCGCCCCGGCCCGCTCAAGCAGCAGAATAAAGCTCATAAAGGCGGACGGCATCGGGGTCGGGGATCTGCACAGCGGGACGGCAAGGGCCGTCTGGCACTGAAAACCCTAAGCAAGAAGGTGAGAAAAGAACTCAGCAGAGTCGACCAGAGGCATCGCGCCAGCCAGCTCCGAAAGCAGAAGAAGGAGGCGGTTCTGGCAGAGAAGAGACAGCTGGGTGGCAAGGATGGCCCTCCTCATCAGGTACTGGTGGTGCCCCTGCACAGCAGAATTTCCCTGCCAGAGGCCATGCAGCTGCTTCAAGATAGGGACACTGGAACAGTACACTTGAATGAATTGGGAAACACCCAGAACTTTATGCTGCTGTGCCCCCGCTTGAAACATCGGTGGTTTTTCACCTCAGCAAGGCCAGGGGATCTGCACGTTGTGTTAGACATGGCTAAAGTAGCTGATACCATCCTGTTCCTCCTTGATCCACTAGAAGGCTGGGACAGCACCGCACTAGCTGTCCAGGGGATTTCTGGCCTCCCACTGAAGAAACAAATAGATACCAGGAAGAAGCTAAGTAAAGCAGTGGAGAAGCGCTTTCCGCATGACAAACTCCTCTTGTTAGACACTCAACAGGAGGCAGGGATGCTGCTTAGGCAGTTGGCTAACCAGAAGCAACAGCATCTTGCTTTTCGAGATCGGCGGGCCTACCTATTTGCCCATGCTGTTGATTTTGTTCCTAGTGAAGAGAATAACTTGGTGGGCACCTTGAAAATTTCAGGCTATGTTCGAGGGCAGACTCTGAATGTCAATAGGTTGCTGCATATCGTTGGATATGGTGATTTCCAGATGAAACAGATAGATGCCCCCGGAGACCCTTTCCCTTTAAATCCTAGAGGAATTAAACCCCAAAAGGACCCAGACATGGCAATGGAGATTTGTGCTACGGATGCTGTAGATGATATGGAAGAAGGTCTTAAAGTCCTAATGAAGGCAGACCCTGGTAGACAGGAATCCTTGCAAGCAGAGGTTATCCCAGATCCAATGGAGGGAGAGCAAACCTGGCCCACTGAGGAGGAGCTGAGCGAGGCAAAGGGTCAGTATTGGTAA
Amino sequence
MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTALAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKGQYW*