ENST00000600440.5 SYDE1

Information
Transcript ID
ENST00000600440.5
Genome
hg19
Position
chr19:15,218,216-15,225,796
Strand
+
CDS length
2,007
Amino acid length
669
Gene symbol
SYDE1
Gene type
protein-coding
Gene description
synapse defective Rho GTPase homolog 1
Gene Entrez Gene ID
85360
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 15,218,216 15,218,332
2 15,220,068 15,220,208
3 15,220,515 15,221,159
4 15,221,332 15,221,546
5 15,222,124 15,222,250
6 15,222,443 15,222,603
7 15,223,157 15,223,382
8 15,224,371 15,225,796
CDS
Exon number Type Start Stop
1 CDS 15,218,245 15,218,332
2 CDS 15,220,068 15,220,208
3 CDS 15,220,515 15,221,159
4 CDS 15,221,332 15,221,546
5 CDS 15,222,124 15,222,250
6 CDS 15,222,443 15,222,603
7 CDS 15,223,157 15,223,382
8 CDS 15,224,371 15,224,774
Other genome
Genome Chromosome Start End Links
hg38 chr19 15,107,405 15,114,985 Link
CDS sequence
ATGGCCGAGCCGCTACTCAGGAAAACCTTCTCCCGCCTGCGGGGCCGGGAGAAACTTCCCCGGAAAAAGTCGGACGCCAAGGAGCGCGGGCCTGGGGTACCTGGCACTGGGGAGCCCGCCGGCGAGATCTGGTACAACCCCATCCCTGAGGAAGACCCCAGACCTCCAGCACCTGAGCCCCCGGGGCCACAGCCTGGCTCAGCTGAGTCAGAGGGCCTGGCCCCCCAAGGTGCAGCCCCCGCCAGCCCCCCAACCAAAGCCTCCCGCACCAAGTCCCCGGGCCCCGCCAGGCGCCTCTCCATAAAGATGAAGAAGCTGCCGGAACTGCGGCGCCGCCTGAGCCTGCGAGGCCCCCGGGCTGGCAGGGAGCGCGAGAGGGCTGCCCCTGCGGGCTCCGTCATCAGCCGCTACCACCTGGACAGCAGCGTGGGGGGCCCCGGGCCGGCAGCAGGGCCTGGGGGCACCCGGAGCCCGAGGGCCGGTTACCTCAGCGACGGGGACTCACCGGAGCGCCCAGCTGGGCCCCCATCACCCACCTCCTTCCGGCCCTACGAGGTGGGTCCCGCAGCCCGGGCACCCCCGGCCGCACTCTGGGGCCGCCTCAGCCTGCACCTGTACGGTCTCGGGGGGCTGCGGCCAGCGCCGGGGGCCACCCCCAGGGACCTCTGCTGCCTACTGCAAGTGGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAGGGGGGCCGGACTTCCTGCGGCTGGACCACACCTTCCACCTGGAGCTGGAGGCCGCCAGGCTCCTGCGCGCCCTGGTGCTTGCGTGGGACCCTGGCGTGAGAAGGCACCGGCCCTGTGCCCAGGGCACCGTGCTGCTGCCCACGGTCTTCCGAGGGTGCCAGGCCCAACAGCTGGCCGTGCGCCTGGAGCCTCAGGGGCTGCTGTATGCCAAGCTGACCCTGTCGGAGCAGCAGGAAGCCCCTGCCACAGCTGAGCCCCGCGTCTTTGGGCTGCCCCTGCCACTGCTGGTGGAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCGAGGGCTGCGGGTAGTGGGACTGTACCGTCTTTGTGGCTCAGCGGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGAGCGGGACAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGTCATCACTGGCATCCTCAAGGATTATCTTCGAGAGTTGCCCACCCCACTCATCACCCAGCCCCTGTATAAGGTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGTTCCCCCCACCACTGAGGGCACCCGAGGGCTCCTCAGCTGCCTGCCAGATGTGGAAAGGGCCACGCTGACGCTTCTCCTGGACCACCTGCGCCTCGTCTCCTCCTTCCATGCCTACAACCGCATGACCCCACAGAACTTGGCCGTGTGCTTCGGGCCTGTGCTGCTGCCGGCACGCCAGGCGCCCACAAGGCCTCGTGCCCGCAGCTCCGGCCCAGGCCTTGCCAGTGCAGTGGACTTCAAGCACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCCAGATCCCCGCCTGCCCCGACAATCTCCAGATGTCGCGCCTTACTTGCGACCCAAACGACAGCCACCTCTGCACCTGCCGCTGGCAGACCCCGAAGTGGTGACTCGGCCCCGCGGTCGAGGAGGCCCCGAAAGCCCCCCGAGCAACCGCTACGCCGGCGACTGGAGCGTTTGCGGGCGGGACTTCCTGCCCTGTGGGCGGGATTTCCTGTCCGGGCCAGACTACGACCACGTGACGGGCAGTGACAGCGAGGACGAGGACGAGGAGGTCGGCGAGCCGAGGGTCACCGGTGACTTCGAAGACGACTTCGATGCGCCCTTCAACCCGCACCTGAATCTCAAAGACTTCGACGCCCTCATCCTGGATCTGGAGAGAGAGCTCTCCAAGCAAATCAACGTGTGCCTCTGA
Amino sequence
MAEPLLRKTFSRLRGREKLPRKKSDAKERGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL*