ENST00000600440.5 SYDE1

Information
Transcript ID
ENST00000600440.5
Genome
hg38
Position
chr19:15,107,405-15,114,985
Strand
+
CDS length
2,007
Amino acid length
669
Gene symbol
SYDE1
Gene type
protein-coding
Gene description
synapse defective Rho GTPase homolog 1
Gene Entrez Gene ID
85360
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 15,107,405 15,107,521
2 15,109,257 15,109,397
3 15,109,704 15,110,348
4 15,110,521 15,110,735
5 15,111,313 15,111,439
6 15,111,632 15,111,792
7 15,112,346 15,112,571
8 15,113,560 15,114,985
CDS
Exon number Type Start Stop
1 CDS 15,107,434 15,107,521
2 CDS 15,109,257 15,109,397
3 CDS 15,109,704 15,110,348
4 CDS 15,110,521 15,110,735
5 CDS 15,111,313 15,111,439
6 CDS 15,111,632 15,111,792
7 CDS 15,112,346 15,112,571
8 CDS 15,113,560 15,113,963
Other genome
Genome Chromosome Start End Links
hg19 chr19 15,218,216 15,225,796 Link
CDS sequence
ATGGCCGAGCCGCTACTCAGGAAAACCTTCTCCCGCCTGCGGGGCCGGGAGAAACTTCCCCGGAAAAAGTCGGACGCCAAGGAGCGCGGGCCTGGGGTACCTGGCACTGGGGAGCCCGCCGGCGAGATCTGGTACAACCCCATCCCTGAGGAAGACCCCAGACCTCCAGCACCTGAGCCCCCGGGGCCACAGCCTGGCTCAGCTGAGTCAGAGGGCCTGGCCCCCCAAGGTGCAGCCCCCGCCAGCCCCCCAACCAAAGCCTCCCGCACCAAGTCCCCGGGCCCCGCCAGGCGCCTCTCCATAAAGATGAAGAAGCTGCCGGAACTGCGGCGCCGCCTGAGCCTGCGAGGCCCCCGGGCTGGCAGGGAGCGCGAGAGGGCTGCCCCTGCGGGCTCCGTCATCAGCCGCTACCACCTGGACAGCAGCGTGGGGGGCCCCGGGCCGGCAGCAGGGCCTGGGGGCACCCGGAGCCCGAGGGCCGGTTACCTCAGCGACGGGGACTCACCGGAGCGCCCAGCTGGGCCCCCATCACCCACCTCCTTCCGGCCCTACGAGGTGGGTCCCGCAGCCCGGGCACCCCCGGCCGCACTCTGGGGCCGCCTCAGCCTGCACCTGTACGGTCTCGGGGGGCTGCGGCCAGCGCCGGGGGCCACCCCCAGGGACCTCTGCTGCCTACTGCAAGTGGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAGGGGGGCCGGACTTCCTGCGGCTGGACCACACCTTCCACCTGGAGCTGGAGGCCGCCAGGCTCCTGCGCGCCCTGGTGCTTGCGTGGGACCCTGGCGTGAGAAGGCACCGGCCCTGTGCCCAGGGCACCGTGCTGCTGCCCACGGTCTTCCGAGGGTGCCAGGCCCAACAGCTGGCCGTGCGCCTGGAGCCTCAGGGGCTGCTGTATGCCAAGCTGACCCTGTCGGAGCAGCAGGAAGCCCCTGCCACAGCTGAGCCCCGCGTCTTTGGGCTGCCCCTGCCACTGCTGGTGGAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCGAGGGCTGCGGGTAGTGGGACTGTACCGTCTTTGTGGCTCAGCGGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGAGCGGGACAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGTCATCACTGGCATCCTCAAGGATTATCTTCGAGAGTTGCCCACCCCACTCATCACCCAGCCCCTGTATAAGGTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGTTCCCCCCACCACTGAGGGCACCCGAGGGCTCCTCAGCTGCCTGCCAGATGTGGAAAGGGCCACGCTGACGCTTCTCCTGGACCACCTGCGCCTCGTCTCCTCCTTCCATGCCTACAACCGCATGACCCCACAGAACTTGGCCGTGTGCTTCGGGCCTGTGCTGCTGCCGGCACGCCAGGCGCCCACAAGGCCTCGTGCCCGCAGCTCCGGCCCAGGCCTTGCCAGTGCAGTGGACTTCAAGCACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCCAGATCCCCGCCTGCCCCGACAATCTCCAGATGTCGCGCCTTACTTGCGACCCAAACGACAGCCACCTCTGCACCTGCCGCTGGCAGACCCCGAAGTGGTGACTCGGCCCCGCGGTCGAGGAGGCCCCGAAAGCCCCCCGAGCAACCGCTACGCCGGCGACTGGAGCGTTTGCGGGCGGGACTTCCTGCCCTGTGGGCGGGATTTCCTGTCCGGGCCAGACTACGACCACGTGACGGGCAGTGACAGCGAGGACGAGGACGAGGAGGTCGGCGAGCCGAGGGTCACCGGTGACTTCGAAGACGACTTCGATGCGCCCTTCAACCCGCACCTGAATCTCAAAGACTTCGACGCCCTCATCCTGGATCTGGAGAGAGAGCTCTCCAAGCAAATCAACGTGTGCCTCTGA
Amino sequence
MAEPLLRKTFSRLRGREKLPRKKSDAKERGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL*