ENST00000414439.5 CARF
Information
- Transcript ID
- ENST00000414439.5
- Genome
- hg38
- Position
- chr2:202,912,283-202,983,642
- Strand
- +
- CDS length
- 1,872
- Amino acid length
- 624
- Gene symbol
- CARF
- Gene type
- protein-coding
- Gene description
- calcium responsive transcription factor
- Gene Entrez Gene ID
- 79800
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 202,912,283 | 202,912,324 |
| 2 | 202,917,877 | 202,918,043 |
| 3 | 202,952,559 | 202,952,679 |
| 4 | 202,954,005 | 202,954,134 |
| 5 | 202,955,674 | 202,955,758 |
| 6 | 202,961,237 | 202,961,426 |
| 7 | 202,966,978 | 202,967,098 |
| 8 | 202,969,919 | 202,970,062 |
| 9 | 202,971,505 | 202,971,738 |
| 10 | 202,974,334 | 202,974,496 |
| 11 | 202,977,269 | 202,977,332 |
| 12 | 202,981,555 | 202,981,685 |
| 13 | 202,982,072 | 202,982,441 |
| 14 | 202,983,506 | 202,983,642 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 3 | CDS | 202,952,559 | 202,952,679 |
| 4 | CDS | 202,954,005 | 202,954,134 |
| 5 | CDS | 202,955,674 | 202,955,758 |
| 6 | CDS | 202,961,237 | 202,961,426 |
| 7 | CDS | 202,966,978 | 202,967,098 |
| 8 | CDS | 202,969,919 | 202,970,062 |
| 9 | CDS | 202,971,505 | 202,971,738 |
| 10 | CDS | 202,974,334 | 202,974,496 |
| 11 | CDS | 202,977,269 | 202,977,332 |
| 12 | CDS | 202,981,555 | 202,981,685 |
| 13 | CDS | 202,982,072 | 202,982,441 |
| 14 | CDS | 202,983,506 | 202,983,624 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr2 | 203,777,006 | 203,848,365 | Link |
CDS sequence
ATGATCGTTGCCAGCCCAACAGAAAATGGACAGGTACTTCGTGTAATTCCACCTACCCAGACAGGAATGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTGAATAGTCCTCGGGATGTCCCTGAAGAGAAACCCAGTAACAGAAACTTACCAACTGTAAGAGTGGATACTCTAGCAGACAATACCAGCAATTACATTCTTCATCCTCAAACATCCTTCCCATTGCCCAAAAAGTCAGTGACCGGAATGCTGGAAGAACCCCTTCTGGGGCCTCTTCAGCCACTTTCTTCTAATACACCTATATGGGCCTGCCGTCTTAGGAGCTGTGAGAAAATTGGAGATTCATACCGTGGCTACTGTGTAAGTGAGACTGAATTAGAAAGTGTCCTAACATTTCACAAGCAGCAAACACAGAGTGTTTGGGGGACCCGTCAGTCTCCAAGCCCAGCCAAGCCTGCTACACGCTTGATGTGGAAATCCCAGTATGTTCCATATGATGGAATCCCATTTGTTAATGCAGGGAGTAGAGCTGTGGTAATGGAGTGTCAGTATGGGCCAAGAAGAAAAGGTTTCCAGTTAAAAAAAGTCAGTGAGCAGGAAAGCAGGTCTTGTCAGCTCTACAAAGCCACTTGTCCAGCTCGGATTTACATTAAAAAGGTACAGAAGTTTCCTGAATATAGAGTTCCTACAGACCCCAAAATTGACAAGAAAATTATCAGAATGGAGCAGGAGAAAGCTTTTAACATGCTAAAGAAGAACTTGGTAGATGCTGGTGGTGTTCTTAGGTGGTATGTACAGTTACCTACACAGCAAGCTCATCAGTATCATGAATTAGAGACTCCCTGCCTCACTTTGTCACCTTCTCCTTTTCCTGTGTCTTCTCTTGAAGAAGAGGAAACTGCAGTTAGAGATGAGAATTGTGCATTACCCTCACGTTTACATCCTCAAGTAGCACATAAGATTCAAGAATTAGTATCACAGGGAATAGAACAAGTGTATGCAGTAAGGAAACAGCTAAGAAAATTTGTGGAAAGGGAACTGTTCAAACCCGATGAGGTACCTGAAAGACATAATTTATCTTTTTTTCCAACTGTAAATGATATAAAAAATCACATCCATGAGGTACAGAAATCCTTGAGAAATGGAGATACGGTATATAACTCAGAGATTATTCCAGCAACGCTTCAATGGACTACAGACAGTGGGAATATTCTCAAAGAGACCATGACAGTTACATTTGCAGAAGGAAATTCACCAGGAGAATCAATTACCACCAAAGTGGAAACAAATCAGACCAGGGGTTCTTTGTCTCCTGAGCCAACCCACTTGCTCTCCTCACTCTCCTCATTTCAGCCCAAAATATTTACACAACTACAGGGTTTGCAGTTACAACCAAGGTACACCTCTCCTGATGAATCACCAGCTGTGGTATCAGTAAATAACCAGCCGTCCTCTAGTCCTTCAGGACTTCTGGATACAATAGGAAGTGCTGTAATGAATAATAATTCTCTACTGCTTGGTCAAAGTCATAGCCTTCAAAGAGATACATGCTTAACCCAAAACAATAGTACTGCCTCCACCATGGGTAACCTTCCAGAACCAGATCAAAATCTAGTTGCAATGGACGAGCTGGTAGAAGTTGGAGATGTTGAGGATACAGGGAATCTGGAAGGAACTGTTCATCGGATTCTGTTGGGAGATGTGCAGACTATTCCAATACAGATTATAGACAACCACTCAGCTCTTATTGAAGAAAATCCAGAAAGTACCATTTCTGTGAGCCAAGTTAAACAAGAACCCAAAGAACCAGCATTGTCTATGGAAGCAAAAAAAACTGTGGACTATAAGAAATTATCTGCTACATAA
Amino sequence
MIVASPTENGQVLRVIPPTQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLPKKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKVSEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKKNLVDAGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQVAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLRNGDTVYNSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSLSPEPTHLLSSLSSFQPKIFTQLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGSAVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYKKLSAT*