ENST00000374116.3 HMGA1

Information
Transcript ID
ENST00000374116.3
Genome
hg38
Position
chr6:34,238,791-34,246,230
Strand
+
CDS length
291
Amino acid length
97
Gene symbol
HMGA1
Gene type
protein-coding
Gene description
high mobility group AT-hook 1
Gene Entrez Gene ID
3159
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 34,238,791 34,238,957
2 34,240,737 34,240,882
3 34,242,712 34,242,795
4 34,243,468 34,243,518
5 34,244,831 34,246,230
CDS
Exon number Type Start Stop
2 CDS 34,240,781 34,240,882
3 CDS 34,242,712 34,242,795
4 CDS 34,243,468 34,243,518
5 CDS 34,244,831 34,244,884
Other genome
Genome Chromosome Start End Links
hg19 chr6 34,206,568 34,214,007 Link
CDS sequence
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGAAGGAGCCCAGCGAAGTGCCAACACCTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCAGTGA
Amino sequence
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ*