ENST00000323108.12 SPATS1
Information
- Transcript ID
- ENST00000323108.12
- Genome
- hg38
- Position
- chr6:44,342,660-44,377,166
- Strand
- +
- CDS length
- 903
- Amino acid length
- 301
- Gene symbol
- SPATS1
- Gene type
- protein-coding
- Gene description
- spermatogenesis associated serine rich 1
- Gene Entrez Gene ID
- 221409
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 44,342,660 | 44,342,760 |
| 2 | 44,343,096 | 44,343,234 |
| 3 | 44,352,726 | 44,352,873 |
| 4 | 44,360,446 | 44,360,570 |
| 5 | 44,361,831 | 44,361,992 |
| 6 | 44,368,379 | 44,368,499 |
| 7 | 44,370,051 | 44,370,113 |
| 8 | 44,376,358 | 44,376,473 |
| 9 | 44,377,035 | 44,377,166 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 44,343,096 | 44,343,234 |
| 3 | CDS | 44,352,726 | 44,352,873 |
| 4 | CDS | 44,360,446 | 44,360,570 |
| 5 | CDS | 44,361,831 | 44,361,992 |
| 6 | CDS | 44,368,379 | 44,368,499 |
| 7 | CDS | 44,370,051 | 44,370,113 |
| 8 | CDS | 44,376,358 | 44,376,473 |
| 9 | CDS | 44,377,035 | 44,377,063 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr6 | 44,310,397 | 44,344,903 | Link |
CDS sequence
ATGAGTCCATCCATGCTCACTGGAAACAGTCCACGGGGCTGCCGTCTCCCCTCCATCTCAAGCACGACCTGCGGCAGACAGCTGGAGAAGGTTCCAGAAAAAAGGGACTCTGGCATGACCGAGGTGGAGAGGACCTACAGTGCTAATTGCAGTGATTTTCTGGAATCTAAGGGATGTTTTGCCAACACAACACCCTCTGGCAAAAGTGTCAGTTCCTCATCTTCTGTGGAAACAGGCCCAAGTGTCAGTGAGCCTCCTGGCCTCCCCAGAGTGTCTGCTTACGTAGACACCACTGCTGACTTGGATCGGAAACTCTCCTTCTCACATTCTGATCACTCCTCTGAAATGTCGTTGCCTGAAGTCCAAAAGGATAAATATCCTGAGGAATTCAGCCTGCTTAAGTTGCAGACGAAAGATGGGCATCGTCCTGAGTGGACATTTTACCCAAGGTTTAGCAGCAACATCCACACCTACCACGTCGGAAAGCAGTGCTTCTTTAATGGAGTCTTCCTCGGCAACAAGAGGTCTCTATCAGAGAGGACGGTGGACAAGTGCTTTGGGAGAAAGAAATACGATATTGATCCCAGGAATGGAATCCCAAAGTTAACTCCAGGCGACAATCCATATATGTACCCAGAACAGAGTAAAGGCTTCCACAAAGCAGGATCAATGCTCCCACCAGTGAATTTTTCAATAGTGCCTTATGAAAAGAAATTTGATACATTTATTCCACTTGAGCCTCTTCCACAAATTCCCAACTTGCCTTTCTGGGTGAAGGAGAAGGCCAACAGTTTGAAAAATGAGATACAAGAGGTTGAGGAGCTTGACAACTGGCAGCCAGCAGTGCCCTTAATGCACATGCTACACCTTTCTGGTGCTTTGGACTTTCCAAGACAATCCTGA
Amino sequence
MSPSMLTGNSPRGCRLPSISSTTCGRQLEKVPEKRDSGMTEVERTYSANCSDFLESKGCFANTTPSGKSVSSSSSVETGPSVSEPPGLPRVSAYVDTTADLDRKLSFSHSDHSSEMSLPEVQKDKYPEEFSLLKLQTKDGHRPEWTFYPRFSSNIHTYHVGKQCFFNGVFLGNKRSLSERTVDKCFGRKKYDIDPRNGIPKLTPGDNPYMYPEQSKGFHKAGSMLPPVNFSIVPYEKKFDTFIPLEPLPQIPNLPFWVKEKANSLKNEIQEVEELDNWQPAVPLMHMLHLSGALDFPRQS*