chr10:89692904:C>G Detail (hg19) (PTEN)

Information

Genome

Assembly Position
hg19 chr10:89,692,904-89,692,904
hg38 chr10:87,933,147-87,933,147 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000314.6:c.388C>G NP_000305.3:p.Arg130Gly
NM_001304717.2:c.388C>G NP_001291646.2:p.Arg130Gly
NM_001304718.1:c.388C>G NP_001291647.1:p.Arg130Gly
Summary

MGeND

Clinical significance Pathogenic
Variant entry 2
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 601728 OMIM
HGNC 9588 HGNC
Ensembl ENSG00000171862 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM5219 COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
Pathogenic breast somatic MGS000038
(TMGS000091) 		Manabu Muto
Ichiro Kinoshita		 Kyoto University
Department of Medical Oncology Faculty of Medicine and Graduate School of Medicine Hokkaido University
Pathogenic adenosquamous carcinoma somatic MGS000082
(TMGS000165) 		Kenjiro Kosaki
Kenjiro Kosaki		 Keio University
Mutation View
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Likely pathogenic 2016-05-31 no assertion criteria provided Papillary renal cell carcinoma type 1 somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Malignant melanoma of skin somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Malignant neoplasm of body of uterus somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided uterine carcinosarcoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided prostate adenocarcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided glioblastoma somatic Detail
Likely pathogenic 2015-07-14 no assertion criteria provided Malignant tumor of floor of mouth somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Neoplasm of uterine cervix somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Squamous cell carcinoma of the head and neck somatic Detail
Pathogenic 2014-10-02 no assertion criteria provided Neoplasm of ovary somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Neoplasm of the large intestine somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Squamous cell lung carcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Small cell lung carcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Breast neoplasm somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided gastric adenocarcinoma somatic Detail
Pathogenic no assertion criteria provided endometrial carcinoma somatic Detail
Pathogenic 2019-06-25 reviewed by expert panel PTEN hamartoma tumor syndrome germline Detail
Pathogenic 2022-08-18 criteria provided, single submitter not provided germline Detail
Pathogenic Likely pathogenic 2023-09-27 criteria provided, multiple submitters, no conflicts Cowden syndrome 1 somatic unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.001 Adenocarcinoma of lung (disorder) Therefore, we created a tetracycline inducible expression system of wild-type PT... BeFree 21333374 Detail
0.454 Bannayan-Riley-Ruvalcaba syndrome NA CLINVAR Detail
0.126 PTEN hamartoma tumor syndrome NA CLINVAR Detail
0.122 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
0.182 Glioma In contrast, ectopic expression of wild type PTEN, but not the PTEN(G129R) mutan... BeFree 10435616 Detail
0.560 MACROCEPHALY/AUTISM SYNDROME NA CLINVAR Detail
0.007 Glioma In contrast, ectopic expression of wild type PTEN, but not the PTEN(G129R) mutan... BeFree 10435616 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Papillary renal cell carcinoma type 1 ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Malignant melanoma of skin ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Malignant neoplasm of body of uterus ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Uterine carcinosarcoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Prostate adenocarcinoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Glioblastoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Malignant tumor of floor of mouth ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Neoplasm of uterine cervix ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Squamous cell carcinoma of the head and neck ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Neoplasm of ovary ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Neoplasm of the large intestine ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Squamous cell lung carcinoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Small cell lung carcinoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Breast neoplasm ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Gastric adenocarcinoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Endometrial carcinoma ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND PTEN hamartoma tumor syndrome ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND not provided ClinVar Detail
NM_000314.8(PTEN):c.388C>G (p.Arg130Gly) AND Cowden syndrome 1 ClinVar Detail
Therefore, we created a tetracycline inducible expression system of wild-type PTEN (PTEN-WT) as well... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
In contrast, ectopic expression of wild type PTEN, but not the PTEN(G129R) mutant, in PTEN-mutant gl... DisGeNET Detail
NA DisGeNET Detail
In contrast, ectopic expression of wild type PTEN, but not the PTEN(G129R) mutant, in PTEN-mutant gl... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs121909224 dbSNP
Genome
hg19
Position
chr10:89,692,904-89,692,904
Variant Type
snv
Reference Allele
C
Alternative Allele
G
Genome browser