PRDM2 PR/SET domain 2

Information
Symbol
PRDM2
Type
protein-coding
Description
PR/SET domain 2
Entrez Gene ID
7799
Genome
hg19
Position
chr1:14,031,350-14,151,574
Genome
hg38
Position
chr1:13,704,855-13,825,079
MIM
601196 OMIM
HGNC
HGNC:9347 HGNC
Ensembl
ENSG00000116731 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Likely pathogenic 0 2
Benign 0 6
Likely benign 0 20
Uncertain significance 0 192
Ranking
ClinVar
0
0
2
216
2
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM HUMHOXY1
SYNONYM KMT8
SYNONYM KMT8A
SYNONYM MTB-ZF
SYNONYM RIZ
SYNONYM RIZ1
SYNONYM RIZ2
MIM 601196 OMIM
HGNC HGNC:9347 HGNC
Ensembl ENSG00000116731 Ensembl
AllianceGenome HGNC:9347
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000505823.5 hg38 chr1 13,749,436 13,823,419 73,984
ENST00000235372.11 hg38 chr1 13,704,855 13,825,079 120,225
ENST00000343137.8 hg38 chr1 13,749,415 13,787,657 38,243
ENST00000376048.9 hg38 chr1 13,700,240 13,825,065 124,826
ENST00000311066.10 hg38 chr1 13,700,188 13,825,079 124,892
ENST00000413440.5 hg38 chr1 13,749,403 13,788,079 38,677
ENST00000503842.5 hg38 chr1 13,749,435 13,823,499 74,065
ENST00000311066.10 hg19 chr1 14,026,683 14,151,574 124,892
ENST00000376048.9 hg19 chr1 14,026,735 14,151,560 124,826
ENST00000235372.11 hg19 chr1 14,031,350 14,151,574 120,225
ENST00000413440.5 hg19 chr1 14,075,898 14,114,574 38,677
ENST00000343137.8 hg19 chr1 14,075,910 14,114,152 38,243
ENST00000503842.5 hg19 chr1 14,075,930 14,149,994 74,065
ENST00000505823.5 hg19 chr1 14,075,931 14,149,914 73,984
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