ENST00000311487.9 HMGA1

Information
Transcript ID
ENST00000311487.9
Genome
hg19
Position
chr6:34,204,650-34,214,008
Strand
+
CDS length
324
Amino acid length
108
Gene symbol
HMGA1
Gene type
protein-coding
Gene description
high mobility group AT-hook 1
Gene Entrez Gene ID
3159
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 34,204,650 34,204,740
2 34,204,981 34,205,094
3 34,208,514 34,208,692
4 34,210,489 34,210,572
5 34,211,245 34,211,295
6 34,212,608 34,214,008
CDS
Exon number Type Start Stop
3 CDS 34,208,558 34,208,692
4 CDS 34,210,489 34,210,572
5 CDS 34,211,245 34,211,295
6 CDS 34,212,608 34,212,661
Other genome
Genome Chromosome Start End Links
hg38 chr6 34,236,873 34,246,231 Link
CDS sequence
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACACCTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCAGTGA
Amino sequence
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ*