ENST00000311487.9 HMGA1

Information
Transcript ID
ENST00000311487.9
Genome
hg38
Position
chr6:34,236,873-34,246,231
Strand
+
CDS length
324
Amino acid length
108
Gene symbol
HMGA1
Gene type
protein-coding
Gene description
high mobility group AT-hook 1
Gene Entrez Gene ID
3159
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 34,236,873 34,236,963
2 34,237,204 34,237,317
3 34,240,737 34,240,915
4 34,242,712 34,242,795
5 34,243,468 34,243,518
6 34,244,831 34,246,231
CDS
Exon number Type Start Stop
3 CDS 34,240,781 34,240,915
4 CDS 34,242,712 34,242,795
5 CDS 34,243,468 34,243,518
6 CDS 34,244,831 34,244,884
Other genome
Genome Chromosome Start End Links
hg19 chr6 34,204,650 34,214,008 Link
CDS sequence
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACACCTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCAGTGA
Amino sequence
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ*